MmuEX1003865 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118548830-118549537:-
Coord C1 exon
chr6:118549386-118549537
Coord A exon
chr6:118549217-118549269
Coord C2 exon
chr6:118548830-118548959
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTGCATGTTGTGTAGGCC
3' ss Score
6.48
5' ss Seq
TCTGTGGGT
5' ss Score
-0
Exon sequences
Seq C1 exon
AAACAAAATGTGGCTTTGAGGAGCTAGACAATGGAGCCCGGTTTGATGACAGTGATTCCCCTAGTGAAAGTGAAGATGCCATTGAGGTTGAGCCTGCGCCATCAGTCAGAGTCCAGACCCTCTCCCCATCCCGTCAGTCACCTGACCCTGTG
Seq A exon
GCCAGAGGTGTCCGATGCCCTGGAACTGGAATTGCATGTGAATCTGAGCTTCT
Seq C2 exon
GAAGGAGCAACCGAGCTAGCAATTGAAGGAGAAGAAAACGGTACTGATGTTATTGAGAGCGCTTCACAGGAGCAACCAAATCATGACAATTTAACCCGTGCTGATGGTTGGCACAAAAGTAATAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'9-11,'9-9,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.778 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000112830fB5821
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAGCCCGGTTTGATGAC
R:
AATTGCTAGCTCGGTTGCTCC
Band lengths:
147-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types