MmuEX1004767 @ mm10
Exon Skipping
Gene
ENSMUSG00000046876 | Atxn1
Description
ataxin 1 [Source:MGI Symbol;Acc:MGI:104783]
Coordinates
chr13:45795509-45852456:-
Coord C1 exon
chr13:45852321-45852456
Coord A exon
chr13:45849519-45849588
Coord C2 exon
chr13:45795509-45795637
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCCTGGAACCCTGGGGGCAGTCA
3' ss Score
0.82
5' ss Seq
GTGGTTTGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
ATTGCAGCATCCTGGAACAGAATGAAAGGATCTGTGTTGAAACAGCTACAGTAGGGTTACAGTAGACCCTGAGAAAAACAGAGTGGACTTCAGCCTGCACGGATGAGCTTGAAGCAGGAATGGTTTGGGGTAAGTC
Seq A exon
TCAACCACCTTTGCTTGATTCCAAAGAAATCTGTGGTGTCTATCTATGCTTCTGGCAGAACTCCTCAGTG
Seq C2 exon
GTTCAGGCCTCTTACACTGAATTTCTCTACTGCCACCCTTTCTACTCAAGCAACATCTTCAGGAAAAGATCTCCCGGGAAGGAAGTGGCTGCTTGTGGCTTTGCACTGTGATGAAGGCAAATGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046876_MULTIEX1-4/10=3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGACTTCAGCCTGCAC
R:
TCATCACAGTGCAAAGCCACA
Band lengths:
170-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types