MmuEX1005072 @ mm10
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:60125463-60161534:-
Coord C1 exon
chr2:60161435-60161534
Coord A exon
chr2:60155218-60155393
Coord C2 exon
chr2:60125463-60125810
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTGCTTGCCTGTAATTCCAGCAC
3' ss Score
4.32
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACCTGTGCTACCAGAAGTGACAATGGAAGTCCCTCCTGTGAAGAGGAAAGGACACTGACAACGTGTGGATCCTCAGGAGCAAACCAAGTCAGCAGACATG
Seq A exon
CACTGTGAGCCTGCTGCAGAAGACATAACTGATGGAAATACCCTAAAAATAGAGTGCTGGTACACGCCTTTGGGGAAACAGCATGAGCTCGAGGCCAGCCTGGTCTACAGAAGGTTCCAGAACTGCCAGGGCTACAGGGAGAAACAAACAAATACATTGAATAATCCCCACTGAAG
Seq C2 exon
CAACTTTCATTGTTAGAGAGAGGAGAGAGAGAGAAGCCTTGTTGGTTGACGTCACTTGGTTCATGAAGCCTTCGCCTAGAAGTGAAGCTGCTGAACAAACCTTGAGAAGAATCATCTCCTGCTTCAATCTGCTGCTGGATAGGAACTAATCAGAGAGCGAGCGGCGGAAGACGGGGACGGAGGGAGCCAGGGCTTTCGCGATCACGGATCTCACCTCCACTCCAACTCCCTAGACTTTCTGGCAGGAATTAGAAGAGAAATAAGGAGGCGGTGGGGATTCCGAAAAGCTTAACCCGCACCCGGGAAGGGCGAAAATCCCTTCCCCCGCAACTCAGTTCGAAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCAAACCAAGTCAGCA
R:
GAGTGGAGGTGAGATCCGTGA
Band lengths:
249-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types