MmuEX1005527 @ mm10
Exon Skipping
Gene
ENSMUSG00000015488 | Cacfd1
Description
calcium channel flower domain containing 1 [Source:MGI Symbol;Acc:MGI:1924317]
Coordinates
chr2:27018888-27021089:+
Coord C1 exon
chr2:27018888-27018979
Coord A exon
chr2:27019335-27019538
Coord C2 exon
chr2:27020021-27021089
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTAGGTTTCACGCTTTTCAGGTT
3' ss Score
6.87
5' ss Seq
AAGGTCCCT
5' ss Score
0.61
Exon sequences
Seq C1 exon
GGGCGATGCCATTTCTTATGCTCGGATCCAGCAGCAGAGACAGCAGGCAGATGAGGAGAAGCTGGCGGAGACTTTCGAGGGGGAACTGTGAG
Seq A exon
GTTCAAGTTTGTGGAAGTTAGGGCTTCAGTTCTGCTCCATGACCTGTCGTCAGAGCAGAGGAAGAGTACAACAGTGTCCTGAGGCCAGCTACTGCCACCAGGAGCAGGAGAGATGGCTGCTCACTTGAGAATCTACAGCACTCCCAGGATGCAGCATCCTGGGCAGAAGAGCAACCTTGGGAGTGGCCAGAGGGCTGCTGGAAG
Seq C2 exon
CCTGGAGCCTTTGGAGAGCTGGGCAGAGACCAGACCCACCCTACACAGACTTGGCCCCTTCTCGGGTACCAGAGCACAGAGAGTAAGCCTGCATGGTTGGGACAAGGAGAGCTGTTTCACTGGCACATGGCTCCAGGGACATGCCTTGCTGTCCCCTCACCTTTCTCTGCACTGTTCTCTTCCCACTGTCCTGTGACACCGGCATCAGTGGCTTATTAGATGAGTCCTTGGCCATTAGGCACATTTGGTGGCCTGGCTGAAGATGATGTGTCAAGTGCTGAGCCCTGCCTCCCTCCTGCACTAGACCTTCAGCCGGACCTGTCCATGGAACCCAGCCCTGGAGTCACTGAGTCTCCAGGGAATCCTTAGCTTCTCAGGGCTTGAGGCCCAGAGGAGTAGACATTCATTCTCCTTGGTATAGAAGCTCTGATCTGTGGACTTTGGGGATAGCAGAAGTTCTCCAGAGAGCCTGGCCATGCTGAACTGGGGAGTGGCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015488_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PD(0.1=0.0)
A:
NA
C2:
PF102334=Cg6151-P=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCGAGGGGGAACTGTGA
R:
GGCTCAGCACTTGACACATCA
Band lengths:
306-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types