MmuEX1005687 @ mm10
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:182478548-182479742:-
Coord C1 exon
chr1:182479706-182479742
Coord A exon
chr1:182478965-182479051
Coord C2 exon
chr1:182478548-182478613
Length
87 bp
Sequences
Splice sites
3' ss Seq
AAACCAAACACCTTACTTAGCTG
3' ss Score
0.01
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AGCTGTTGATGACGAGATCGAGGCCAACATTGAAGAG
Seq A exon
CTGGGCATGGTGGTGCACACCTGTGACCTCAGCACGGGAGAGGTACAGGCAGGAGGATGAAGAGTTCAAAGCATCTATTGCTCTACA
Seq C2 exon
ATTGACGCCAATGAGGAGGACATTGACGATGGATTCCGAAGGCTCTTTGTTCAGCTGGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'25-30,'25-29,26-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.045
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
ENSMUST00000068505fB6988
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTGATGACGAGATCGA
R:
CTCTCCAGCCAGCTGAACAAA
Band lengths:
103-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types