MmuEX1005907 @ mm10
Exon Skipping
Gene
ENSMUSG00000047696 | Ccdc144b
Description
coiled-coil domain containing 144B [Source:MGI Symbol;Acc:MGI:2681852]
Coordinates
chr3:36035276-36046900:-
Coord C1 exon
chr3:36046708-36046900
Coord A exon
chr3:36044509-36044727
Coord C2 exon
chr3:36035276-36035459
Length
219 bp
Sequences
Splice sites
3' ss Seq
GACATGTTCCATCCTGACAGGGA
3' ss Score
8.66
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTCTGGTAGCCTATTAAAAATCCAGAATGCAATTCATTCATATAAAAGGTTAATACAACTGAAAACTGGTCACTGCAAAGTACTTCTAGAGAAACTTCAAACAGTGGAGAATGAAGTCAACGGACTCCGTAAGAAGCTTGCAGACGCAGCACGTGAACAACTCCAACAAGGACAAGAACTCTGCAATGTAAG
Seq A exon
GGAAATCACAGCAGCAGGAGCCTGAGAGATCTGGTCAGAGTGCATGTACAGTCAAGACACAGAGGGCAATGAATATGCACTCAGCTTGCTTTCTTCATTTTATACAAACCTGGCTGACTTGCCCAGGAAATTGTCCTGCCCACAGTCAAGATGGATCTTCCCACACCAATGTATGTAACCAAGATAACCCCAACAGGCATGCTCAGAAGCCCATCCCAG
Seq C2 exon
GTTTACTTTAAAACAAGAAGAAGAGAAGAGAAAAAATGTCGTCTGGGTTTATGACAAAATGAAGGAGCAGCTGAGAGAAAAAGAAGATCAATATAACAAAGAAGTTAAAATGAAACAAAAACTTGAAATTCGTGTTAGGGAACTGGATATGGACCTGAAGACTGTGAGACATAATCTTAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047696_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(32.1=93.8),PF151861=TEX13=PU(10.2=13.8)
A:
PF138691=NUDIX_2=PD(7.1=55.6)
C2:
PF0157614=Myosin_tail_1=FE(32.1=100),PF151861=TEX13=FE(69.3=100)
Main Inclusion Isoform:
ENSMUST00000166644fB7140
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGAAAACTGGTCACTGCA
R:
TGTCTCACAGTCTTCAGGTCCA
Band lengths:
308-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types