MmuEX1006138 @ mm10
Exon Skipping
Gene
ENSMUSG00000086158 | Ccpg1os
Description
cell cycle progression 1, opposite strand [Source:MGI Symbol;Acc:MGI:3648770]
Coordinates
chr9:72979722-72982954:-
Coord C1 exon
chr9:72982854-72982954
Coord A exon
chr9:72982560-72982626
Coord C2 exon
chr9:72979722-72980196
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTTTTGAGACAGGGC
3' ss Score
4.24
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
Seq A exon
GGCTTCCTGTATCCCATGATGGCTTGTCTCCCTGAGATGACCCTTCTGACCCTCTGTGTGATTACTG
Seq C2 exon
GATAAGAAAACTTCCTTGACTTCAGATGCAGAAATGAGACCTGAACCACCGGCTCTGTGCGTGAACCCTGGCAACCCTGTGTTTTCCTGTATGTTGGATCCCAAGACATTGCACACAGCCACCTCACTGTCCAAAGCCCAGATGATTATGTACAAGACCAGTGCCAGCCAGTACGGGGCCTTCTCGCCCAGGCCCTTCTTCTTTCCCTGTAAGTTCCTACCACAAGAGCAAGCGTTTACAGAGCACCTCAAAACAACCGGCTTTTATCAAAACAACAGCCTAAATGTTGGTCCTGACCGAACCAGAACCATCGATTCTCCTAATTATCAACACACACTATGAAAATACATCCTTCTGACAATGGAAGAGAAAATGTCCTGGGGGTATAAGTTTCTAAGTCTAGAACAACTAATTTTGAGCATTTGAAATTTAATAACTTTTAATAAAGAAGATACAAATGCATATTCTCAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086158-'6-5,'6-4,7-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.368
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF148921=DUF4490=WD(100=62.3)
Main Inclusion Isoform:
ENSMUST00000124565fB7280
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types