MmuEX1006600 @ mm10
Exon Skipping
Gene
ENSMUSG00000023021 | Cers5
Description
ceramide synthase 5 [Source:MGI Symbol;Acc:MGI:1919199]
Coordinates
chr15:99751236-99772885:-
Coord C1 exon
chr15:99772675-99772885
Coord A exon
chr15:99772183-99772413
Coord C2 exon
chr15:99751236-99751341
Length
231 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTGACTGCCTCCGAGGCT
3' ss Score
-0.12
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
TCAACTAGGATGAACAGCACAGCCGGCTGGCTGGGACACCGGGACTGTAAGTGATGATCAGGAACGTATAGCCGGGCCGGGAGCCAGAAAGAACTTGAATCTGCTGGACTAGGAAGAGTGTTTCCAAAAGGGAGAAACTAGCCTGAGGTAGGGGTGTGACCATGGTGATGTCGAACCTGCTGAAAGAAACTGGGCGTGGCTCGGGCTGCAG
Seq A exon
GCTGTGGCGGCAGTGGCCGCCGGGCGCGCGTAAGATGGCGACTGCAGCAGCGGAAACCCTGGGCCTCCTGTGGGGTTGGCTGTGGAGCGAGAGCTTCTGGCTGCCTCAGAACGTGAGCTGGGCGGACCTGGAGGGCCCGGGCGACGGCTACGGCTACCCGCGCGCCCAGCACGTGCTGTCGGTGTTCCCGCTGGCAGTGTGCATCTTCTCCGTGAGGATGCTGTTTGAGCG
Seq C2 exon
ATTTATTGCCAAGCCCTGTGCACTCCGTGTTGGCATTAAAGACAGTCCTGTCAATAAGGTGGAACCCAATGACACCCTTGAGAAGGTGTTCGTATCTGTTACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023021_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=PU(30.0=41.7)
Main Inclusion Isoform:
ENSMUST00000175876fB7606
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGATGAACAGCACAGCCG
R:
CCTTCTCAAGGGTGTCATTGGG
Band lengths:
293-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types