MmuEX1006702 @ mm10
Exon Skipping
Gene
ENSMUSG00000026365 | Cfh
Description
complement component factor h [Source:MGI Symbol;Acc:MGI:88385]
Coordinates
chr1:140112433-140120053:-
Coord C1 exon
chr1:140119871-140120053
Coord A exon
chr1:140118587-140118763
Coord C2 exon
chr1:140112433-140112606
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTATTTTACATCAGAGT
3' ss Score
6.72
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGACATGTTCAGCATCAGATATACACATTGACAATGGATTTCTTTCTGAATCTTCTTCTATATATGCTCTAAATAGAGAAACATCCTATAGATGTAAGCAGGGATATGTGACAAATACTGGAGAAATATCAGGATCAATAACTTGCCTTCAAAATGGATGGTCACCTCAACCCTCATGCATTA
Seq A exon
AGTCTTGTGATATGCCTGTATTTGAGAATTCTATAACTAAGAATACTAGGACATGGTTTAAGCTCAATGACAAATTAGACTATGAATGTCTCGTTGGATTTGAAAATGAATATAAACATACCAAAGGCTCTATAACATGTACTTATTATGGATGGTCTGATACACCCTCATGTTATG
Seq C2 exon
AAAGAGAATGCAGTGTTCCCACTCTAGACCGAAAACTAGTCGTTTCCCCCAGAAAAGAAAAATACAGAGTTGGAGATTTGTTGGAATTCTCCTGCCATTCAGGACACAGAGTTGGGCCAGATTCAGTGCAATGCTACCACTTTGGATGGTCTCCTGGTTTCCCTACATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026365-'17-20,'17-16,19-20
Average complexity
C2
Mappability confidence:
92%=100=86%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.5)
A:
PF0008415=Sushi=WD(100=93.3)
C2:
PF0008415=Sushi=WD(100=91.5)
Main Skipping Isoform:
ENSMUST00000066859fB7660
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTAAGCAGGGATATGTGACA
R:
CCATCCAAAGTGGTAGCATTGC
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types