MmuEX1006703 @ mm10
Exon Skipping
Gene
ENSMUSG00000026365 | Cfh
Description
complement component factor h [Source:MGI Symbol;Acc:MGI:88385]
Coordinates
chr1:140108758-140118763:-
Coord C1 exon
chr1:140118587-140118763
Coord A exon
chr1:140112433-140112606
Coord C2 exon
chr1:140108758-140108940
Length
174 bp
Sequences
Splice sites
3' ss Seq
CAATTATCTTACTTTTCAAGAAA
3' ss Score
5.13
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGTCTTGTGATATGCCTGTATTTGAGAATTCTATAACTAAGAATACTAGGACATGGTTTAAGCTCAATGACAAATTAGACTATGAATGTCTCGTTGGATTTGAAAATGAATATAAACATACCAAAGGCTCTATAACATGTACTTATTATGGATGGTCTGATACACCCTCATGTTATG
Seq A exon
AAAGAGAATGCAGTGTTCCCACTCTAGACCGAAAACTAGTCGTTTCCCCCAGAAAAGAAAAATACAGAGTTGGAGATTTGTTGGAATTCTCCTGCCATTCAGGACACAGAGTTGGGCCAGATTCAGTGCAATGCTACCACTTTGGATGGTCTCCTGGTTTCCCTACATGTAAAG
Seq C2 exon
GTCAAGTAGCATCATGTGCACCACCTCTTGAAATTCTTAATGGGGAAATTAATGGAGCAAAAAAAGTTGAATACAGCCATGGTGAAGTGGTGAAATATGATTGCAAACCTAGATTCCTACTGAAGGGACCCAATAAAATCCAGTGTGTTGATGGGAATTGGACAACCTTGCCTGTATGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026365-'19-26,'19-20,24-26
Average complexity
C2
Mappability confidence:
87%=100=71%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.3)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=88.7)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCGTTGGATTTGAAAATGAA
R:
CCAATTCCCATCAACACACTGGA
Band lengths:
252-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types