MmuEX1006888 @ mm10
Exon Skipping
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:118545393-118546949:+
Coord C1 exon
chr1:118545393-118545456
Coord A exon
chr1:118546186-118546188
Coord C2 exon
chr1:118546881-118546949
Length
3 bp
Sequences
Splice sites
3' ss Seq
AAACACCAGAAAGATACTAGAGT
3' ss Score
-14.21
5' ss Seq
AGTGTGGAA
5' ss Score
-17.12
Exon sequences
Seq C1 exon
TCGAGTAGAATTGAAGAGACTGTGTGAGATTTTCACCCGAATGTTTGCCGACCCTCACAGCAAG
Seq A exon
AGT
Seq C2 exon
ATTGCTGATTCAGAAGCAGAATGTGAGGATAAAGAAGGAAATTTGTTTCCATCAGAAGGCTCTTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.007 A=1.000 C2=0.630
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.1=100)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000185405fB7787
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACCCGAATGTTTGCCGA
R:
TGGACAAGAGCCTTCTGATGGA
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types