MmuEX1006894 @ mm10
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113881688-113890121:+
Coord C1 exon
chr9:113881688-113881751
Coord A exon
chr9:113884913-113884915
Coord C2 exon
chr9:113889958-113890121
Length
3 bp
Sequences
Splice sites
3' ss Seq
GGACTTTTCCTGAAGCTCAGATA
3' ss Score
-1.67
5' ss Seq
ATAGTTTAG
5' ss Score
-16.98
Exon sequences
Seq C1 exon
TCGAGTTGAACTGAAAAGATTATGTGAAATTTTCACAAGAATGTTTGCAGATCCTCATGGCAAG
Seq A exon
ATA
Seq C2 exon
GTGTTCAGCATGTTCTTGGAGACTCTAGTAGATTTCATACAAGTCCACAAAGATGATCTTCAAGATTGGTTGTTTGTTCTGCTGACACAGCTGCTGAAAAAAATGGGTGCTGATTTGCTTGGCTCTGTTCAGGCAAAAGTTCAGAAAGCCCTTGATATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.3=100)
A:
NO
C2:
PF123483=CLASP_N=FE(23.8=100)
Main Inclusion Isoform:
ENSMUST00000214522fB7793
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGATCCTCATGGCAAG
R:
TGTCAGCAGAACAAACAACCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types