MmuEX1007152 @ mm10
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:85067657-85092828:+
Coord C1 exon
chr4:85067657-85067880
Coord A exon
chr4:85082893-85083080
Coord C2 exon
chr4:85092637-85092828
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTTATTCAAAGAAC
3' ss Score
6.57
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTAACAGAGAAAAGTGCAAAAATCTACCTGCCCAGAAATCCAGTAGCAGCACCATTTCATTACGAGAACGGATCGTATCCTTGCAGCAACAGAACAGTTTGCTTCAGAACGCCAGGAGAGCAGCAGAGGCGTCTGCTAAGGAGTATAAAGAAGCGAACGAGAAGCTCCTCCATCAACAGCAGGTCAGCGATCACCGATTCCAGACCAGCAGACAGACAATAAAG
Seq A exon
AACTGTACCCTGTTCTGCTCCTGTCCCTCAGCACTGCTTCTAATGTATGTGGCTACCCAATGTGTTTTTACTCGTGTGGCACAGTGTCCTGTCATTGTTTCGTTCTGTGGCTCATTCTCTTTCAGTGTTTCACTCTTTGGAGCTGCCCAAATCAGTTTCTATGAAACTTTAACATTGGGAAGTGATTG
Seq C2 exon
AAGCTCACTCTTGATTTAGCTGAACTTCGAAAAGAAAAAGAAGATTTGTTGAAGAAAGTGGAGTCTTCATCTGACATCATGAGCTTGGCAGAGGAAGTTTCTAGGATAATGGCTCCGCAGATAAAGGTCACCACACTGGGTCCTTCAAGAAGCATGGATTTGGAAATGAAGCAACTGCAGTGTAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=0.000 C2=0.359
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000047023fB7967
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGCGTCTGCTAAGGAGT
R:
TCTTGAAGGACCCAGTGTGGT
Band lengths:
251-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types