MmuEX1007308 @ mm10
Exon Skipping
Gene
ENSMUSG00000004098 | Col5a3
Description
collagen, type V, alpha 3 [Source:MGI Symbol;Acc:MGI:1858212]
Coordinates
chr9:20779901-20781861:-
Coord C1 exon
chr9:20781808-20781861
Coord A exon
chr9:20780283-20780445
Coord C2 exon
chr9:20779901-20780008
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGTCCCATTTCCCCTTTCAGAAA
3' ss Score
11.78
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GGCCCACCTGGACCAACAGGAATAAGAGGTCCAGCAGGCCATTCAGGCCTCCCG
Seq A exon
AAACAACTGTATATACGATGCTGCATTTCTTAATAAGCTTACTCAGCATAAGACATGGCTTGTGCGAGACCCCCGTCCCCAGCTCTCTGTCTTCTTTGCCTTCCCATCTCCTGGGCATTTTTCCCTTAGGACCCTGTCACTGAAGAATGACCTGCTGGTCCAG
Seq C2 exon
GGTGCTGATGGCGCTCAGGGTCGCCGGGGACCCCCTGGCCTCTTCGGGCAGAAGGGGGATGACGGAGTTCGAGGCTTTGTAGGTGTAATTGGTCCTCCAGGTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004098_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.300 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.1=100)
A:
PF0139113=Collagen=PD(1.7=9.1)
C2:
PF0139113=Collagen=PD(35.1=91.7)
Main Inclusion Isoform:
ENSMUST00000004201fB8073
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCACCTGGACCAACAG
R:
CTGCAGACCTGGAGGACCAAT
Band lengths:
162-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types