MmuEX1007465 @ mm10
Exon Skipping
Gene
ENSMUSG00000030862 | Cpxm2
Description
carboxypeptidase X 2 (M14 family) [Source:MGI Symbol;Acc:MGI:1926006]
Coordinates
chr7:132080037-132094350:-
Coord C1 exon
chr7:132094250-132094350
Coord A exon
chr7:132088587-132088652
Coord C2 exon
chr7:132080037-132080121
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATAGACCATGCCTCTTCCAGGAA
3' ss Score
6.14
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
TGAAACCAGTTTGTTTCTTATGGCTTTTATACACAGAGGCTGATGGCGGTTTTATTCAGCATGTCTAGTGTGCCCGTATGCCACAGACTGTGACGCACCAC
Seq A exon
GAACCCAGCTTCTGACTGTGTGAAGGAGCCAACTGTTTTGAGAAATACCAGGAAATTTTAATCACG
Seq C2 exon
GAGTGACTGGGTGACATCCTATAAAGTCATGGTGAGCAATGACAGCCACACATGGGTTACTGTGAAGAATGGATCTGGCGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030862-'12-8,'12-7,13-8
Average complexity
C3
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0075420=F5_F8_type_C=PD(9.2=33.3)
C2:
PF0075420=F5_F8_type_C=FE(19.9=100)
Main Inclusion Isoform:
ENSMUST00000033149fB8191
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTTTTATACACAGAGGCTGA
R:
CATGTCGCCAGATCCATTCTTCA
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types