MmuEX1007468 @ mm10
Exon Skipping
Gene
ENSMUSG00000016481 | Cr1l
Description
complement component (3b/4b) receptor 1-like [Source:MGI Symbol;Acc:MGI:88513]
Coordinates
chr1:195097382-195106922:-
Coord C1 exon
chr1:195106818-195106922
Coord A exon
chr1:195103796-195103907
Coord C2 exon
chr1:195097382-195098841
Length
112 bp
Sequences
Splice sites
3' ss Seq
CATTTTTCTTTTTGCTGAAGTAC
3' ss Score
2.86
5' ss Seq
TTTAAGATC
5' ss Score
-26.74
Exon sequences
Seq C1 exon
CAATACCACAGATGAAAAGTATAAAGAAGTGGGTATTCATTTAAATTATAAAGAAGACAGCTGTGTCCGCCTTCAGTCTCTGCTCACAAGTCAGGAGAACAGCAG
Seq A exon
TACCACTAGCCCAGCACGGAATTCACTCACTCAAGAAGTCTCCTAAATAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAACTGTTTCCTTTT
Seq C2 exon
AACAAGATTTTAAACTCTCATCTCCTCCTCCGCCATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGATCATAATGGACTGAACCTCTGAACCTGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTTGGTCATGGTGTCTGTTCACAGCAATAAAACCCTAACTAAGACAGAAGTTGGTATCAGGAGTGAGTATTGTCATGATAGGCTTGACCATCCTTTTCTTTGGAAGAATGTAGATTTGGGGACTTTGGATTTGGAAAGCTTTGGAATGCTTTAAGTGGAACTTAATGGGCTATTCTAGTAGAAATATGGAAGACTTTGGTGCTGAGGGTGATTTGCACTGTTGAAACTCTAGAGGTTTCAGAGGAGAAGAATTTCAGTATGTGGCCAAGAGACTGCTACTGTAAAATTTTGAAGAAGAATGTGTCTGCTTTTTGCCATTGTCCAAATAGTCTGCCTGAGGCTAAAGTGAAGAGATTTAGATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016481-'25-22,'25-21,26-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.352 C2=0.000
Domain overlap (PFAM):
C1:
PF139081=Shisa=FE(30.7=100),PF067166=DUF1201=PD(15.2=19.4),PF066677=PspB=PD(49.1=77.8)
A:
PF139081=Shisa=PD(16.9=87.5),PF0200911=Rifin_STEVOR=PD(5.3=18.8),PF067166=DUF1201=PD(22.0=68.8),PF066677=PspB=PD(29.3=75.0)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACAAGTCAGGAGAACAGC
R:
GGATGGTCAAGCCTATCATGACA
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types