MmuEX1007907 @ mm10
Exon Skipping
Gene
ENSMUSG00000015224 | Cyp2j9
Description
cytochrome P450, family 2, subfamily j, polypeptide 9 [Source:MGI Symbol;Acc:MGI:1921769]
Coordinates
chr4:96568429-96572073:-
Coord C1 exon
chr4:96571935-96572073
Coord A exon
chr4:96569467-96569525
Coord C2 exon
chr4:96568429-96568902
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATGGGTTTCTGATTTTCCAGGTC
3' ss Score
8.58
5' ss Seq
GGAGTTGAG
5' ss Score
-23.46
Exon sequences
Seq C1 exon
GGTATTATGGTTCTTTCCAACCTAACTGCACTGCACAGGGATCCTAGCGAGTGGACCACCCCAGATACATTCAATCCAGAGCACTTTCTGGAGAATGGACAATTTAAGAAGAGAGAATCCTTTCTGCCATTCTCAATGG
Seq A exon
GTCATGTTTTGTCCTGACGGAGGAATTCTTCTAGAAGAATCTTGGGAATTTACAATGGA
Seq C2 exon
GAAAACGTGCTTGTCTTGGAGAACAACTGGCCAGGTCTGAGCTGTTCATTTTTATCACTACTCTTTTCCAAAAATTTACCTTCAAGCCCCCAGTCAATGAGAAGCTAAGTCTGCAGTTCAGAATGGCTGCAACCGTTTCCCCAGTCAGTCACCGCCTTTGTGCAATTCCTAGGCTGTGATGTTGAAGGAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCTGCTCCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAAACTGAATCAAGTTATGGGTTCAGTAAGTAGAAAGCCACTTGTGAGCTCAATAACACAGCTTCTCAACTGAAGACTTGCAGAGAAAAAATGATTCATCCAGAAATGAAAATGTTTGCAGAGATCATGAGGGAATGGATTAAGTAGATATGTAACTCATAAAAATTATTTAAAAAGTTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015224-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
PF0006717=p450=PD(0.2=16.7)
C2:
PF0006717=p450=PD(11.9=90.0)
Main Inclusion Isoform:
ENSMUST00000055693fB8445
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGACCACCCCAGATACA
R:
CTCAGACCTGGCCAGTTGTTC
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types