MmuEX1007960 @ mm10
Exon Skipping
Gene
ENSMUSG00000048440 | Cyp4f16
Description
cytochrome P450, family 4, subfamily f, polypeptide 16 [Source:MGI Symbol;Acc:MGI:1917351]
Coordinates
chr17:32546630-32550386:+
Coord C1 exon
chr17:32546630-32546759
Coord A exon
chr17:32547466-32547517
Coord C2 exon
chr17:32550253-32550386
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTTGTTTTTAGATC
3' ss Score
10.99
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GCCATGACACCACAGCCAGTGCACTCTCCTGGATCCTGTACAACCTGGCGAGGCACCCCGAATACCAGGAGCGCTGCCGGCAGGAGGTTCAGGAGCTGCTGAGGGACCGAGAGCCTGAGGAGATTGAATG
Seq A exon
ATCGGGTTAAATTAGGTAACCCTGACTGACCTGGACACAATGTGCAGATCAG
Seq C2 exon
GGACGACCTGGCCCAGCTACCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGGCTACATTCCCCAGTCATAGACCTCCTCCGCCGCTGCACCCGGGACATTGTGCTACCTGATGGCCGGGTCATCCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048440_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGAGCCTGAGGAGATTGA
R:
GGCCATCAGGTAGCACAATGT
Band lengths:
143-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types