MmuEX1007996 @ mm10
Exon Skipping
Gene
ENSMUSG00000078700 | D030028A08Rik
Description
RIKEN cDNA D030028A08 gene [Source:MGI Symbol;Acc:MGI:2441931]
Coordinates
chr11:96944845-96953466:+
Coord C1 exon
chr11:96944845-96945093
Coord A exon
chr11:96949539-96949707
Coord C2 exon
chr11:96952581-96953466
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGAGTATGTTGCTTGGGAAGGGT
3' ss Score
1.09
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTAGTGGGAGGCATAGTTTTTGGCAATAGCCAGCCAAGGATACAGGGAACAGGTGCGGCGCCTGCACGCTGACTTCACGTGGTGGATGTCTGGCTGAGAGAGAAGTAGGAAATCCTCACAACGCTTCTTCCAGCTTTGATCTGCCTGGGGCAGCCCGTGGTGGAAGATGACTCTGTAGCCCTGGTGTCTACCAGTATCCGGAGTGGGAGCCCCAAGAGCCATGTAGACAGGCACCCAGCACTGTGCCAG
Seq A exon
GGTTTCCCCAGACCACCAGGATACACGGAGGCCAACGGCAGCTGTGGCAGAAGAGGGCAAGACCATACCTGGAACCAGCACTGTTGTGTGGCTTCACAGGCATGCAAAATGCAGGAGTTACAAGGTCGAGGAGACTTGCACCAGTGTTCCCGAAAGCTCCGCAGGCCAG
Seq C2 exon
CTATGTGGGAGTTGGCTGGCTCTGGGGACGAGCTGTTGGCAGTGCAGGTGGCTGGCGACAAGGATGGAGTGTGAGGCCTCGAGACAGGATGGCAGGCAGCACAGAAGCCTCCGCACTCAGCAGAGCTGCGGTCCTGGCTGCTCTGAGGGTAAGTAGAAAGTGTCTGGTTTCCTGCGTGTCTGAGGCACACTGGCCTCTTCCTCCAGCCTGGCTGCTGCTTTTCAGGCCCCCAACGCTTGTGGCTTTAAATCTGAGTAAGTCACAATCCCTGACTTCTTTCTCTGTAGTTCTGCCAAAATGAAAAGGTGCCCCCCAATACAGTTTCCACTCTGCAACTCTACTCAAACCCAGAGCCGACCCTGAGGAACCTGCTTGGTCCCAGACTTCCCTCCCACCCTGTGGGAACAGTATTTTCTGCAAACCCAACCTTGTGGGCTAAGGCTTTTGACTCCTCTAGCTTCTCACAGACTGGGAGGCAGTGCCTTCCTCGGGGCTGGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078700-'17-14,'17-13,18-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACGTGGTGGATGTCTGG
R:
CTCACACTCCATCCTTGTCGC
Band lengths:
252-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types