MmuEX1008575 @ mm10
Exon Skipping
Gene
ENSMUSG00000020871 | Dlx4
Description
distal-less homeobox 4 [Source:MGI Symbol;Acc:MGI:94904]
Coordinates
chr11:95143627-95146263:-
Coord C1 exon
chr11:95145196-95146263
Coord A exon
chr11:95144923-95144979
Coord C2 exon
chr11:95143627-95144613
Length
57 bp
Sequences
Splice sites
3' ss Seq
GACCTGGTTTCGATTTGCAGTTT
3' ss Score
6.9
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
AGGAAAAGATGGGGAAGGGTAAAACCACGGGGTACCCCAAAAAACCCTTTCCCGGGTGCGAGTTCTCTGCCGGAAGAGGCTCAGAGAGACATTTTTCCAGGCATCTGAAGTGTAAGAGTGGCTTGCTGGAGCTGGAGACTTTGAAAGGAGCTGGCAGAAAGAGTAGACAGCGTGCGGGCCATGACCTAGGCCCTGTGGCCCGGCACCGGCCGCAATGACCTCTTTACCCTGTCCCCTTCCTGACCGTGGTGCCTCCAACGTTGTCTTCCCGGACCTCGCCCCCGCCCTGTCGGTAGTGGCTGCTTACCCGCTCGGACTATCCCCGGGAACCGCAGCTTCTCCCGATTTGTCCTACTCCCAGTCCTACGGCCACCCCCGGTCCTATTCCCACCCTGGGCCGGCAACCCCAGGAGACTCCTACCTGCCCCGCCAGCAACAATTGGTGGCGCCATCTCAGCCCTTTCACAGGCCGGCTGAACACCCGCAGGAGCTCGAAGCAG
Seq A exon
TTTTGAAAAGCCAGGCGGGAGGGCTCCCTACCCCACCCCCTGGAGCAGTGGAGCTGT
Seq C2 exon
GCTGGTCTACCAGTCTCCAGCTCTTTCCCTGGCCTCCTCTGCCTTGTGCCTAAGACATCTTTACCATCTCCACCTTTAACTTTGGGATACATTAGACCCAGCTTCGGTTGCCTGCAGCAAATCTGAGCTCCACTGGAAGGCTTCGGTGAAGACAGGGGAGCAGCTGGCCTTCCTAGCTCCGACCTATGCACAGCCCAACTGACAGACCCTGGCTGGCAGTACGAGGATGCTCTCCATAGACCCACTGACTCCTTGAACATCAAAATGGTCCAATTGTTCTTGGCATAGTCCTCGAAGATGCGCAAGTCTGTGATGTGACTTCACATAATCAGCCCCAAACCAAGATGTTTCTCTCCTTTTCCCTGGTCATTCTGGCATAAATTCATGACACATACACCCCCAACCAAAACCACATTAGAATAGAGGCTCACATTCCTTGTTCTATGGTTGGAGAAACTGAGATAGAAGGAATGCATATAGATAGATCCAGGACACAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020871-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=0.947 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSMUST00000021241fB8852
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCCTATTCCCACCCTGG
R:
GAGCTGGAGACTGGTAGACCA
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types