MmuEX1008580 @ mm10
Exon Skipping
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:131034681-131039049:+
Coord C1 exon
chr7:131034681-131034707
Coord A exon
chr7:131037822-131038133
Coord C2 exon
chr7:131039017-131039049
Length
312 bp
Sequences
Splice sites
3' ss Seq
TTCCCGCTGTGTCAATGCAGGTT
3' ss Score
8.47
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
CATCTCAAACAGCTGTTCCCACAGATG
Seq A exon
GTTTGTCTCTGAGGCTGGTGAATGGCAGTGACCGCTGTCAGGGCCGGGTGGAGGTCCTGTACCAAGGCTCCTGGGGCACCGTGTGTGATGACAGCTGGGACACCCAGGATGCAGATGTCGTCTGTCAACAGCTCGGCTGTGGCCATTCTGTGTCAGCACCAGGAGGGGCCCATTTTGGAGAGGGCTCAGGGAACATTCTCTTGGGAGCTGTGCACTGCTCAGGATGGGAGTCCTACCTGTCCAGCTGTCAACATGACGGGTGGTACAACCATGACTGTGGCCACAGGGAAGACGCCGGAGTTGTATGCTCAG
Seq C2 exon
AAGTGTCCTATACAGCTGAACAAAGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
57%=100=25%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=93.3)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types