MmuEX1008646 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118085651-118104861:-
Coord C1 exon
chr12:118104735-118104861
Coord A exon
chr12:118094649-118094732
Coord C2 exon
chr12:118085651-118085800
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCATTTTTTCCTTCCTGAAGATA
3' ss Score
7.86
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GCTCTCTCTTTGTGAAAAAGCCCTGGCTGAATACCTGGAAACCAAGCGGGTCACATTCCCTCGCTTCTACTTCATCTCCTCTGCAGACTTGCTGGACATTCTCTCCAAGGGAGCACAGCCGAAGCAG
Seq A exon
ATACCTTGCTGCCAGCTATGGCATCGTTCTGACTTGTGAATACAGGATGACTAAGGTAAACTCCATCAACACTCATGCTGGAGA
Seq C2 exon
GTAACACACCACCTTGTCAAACTCTTTGACAGCATCTCGGATCTGCAGTTCGAAGATAATCTGGACGTGTCCACACACAAAGCAGTTGGAATGTTCAGCAAAGAAAAGGAGTATGTCCCATTCCAGGCCGGATGTGAATGCATAGGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'35-32,'35-31,36-32
Average complexity
C2
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.2=100)
A:
PF083938=DHC_N2=PD(0.6=15.4)
C2:
PF083938=DHC_N2=FE(11.9=100)
Main Inclusion Isoform:
ENSMUST00000084806fB8892
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACATTCTCTCCAAGGG
R:
TATGCATTCACATCCGGCCTG
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types