MmuEX1008702 @ mm10
Exon Skipping
Gene
ENSMUSG00000041144 | Dnah7b
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46188576-46191819:+
Coord C1 exon
chr1:46188576-46188685
Coord A exon
chr1:46190910-46191048
Coord C2 exon
chr1:46191651-46191819
Length
139 bp
Sequences
Splice sites
3' ss Seq
AATGCAGGCTTGTTCCACAGACT
3' ss Score
5.46
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GAAAATAATTTAGAAACAAAGATGATCAATGCTGGTTTGCGATATGGCTATGAATATCTGGGAAATTCCCCTAGACTAGTCATAACCCCACTCACAGACCGCTGTTACAG
Seq A exon
ACTGCCAAGAGTGGTGAGCTTGTGAGCTTCCTGTCCCTTCTCTGATTAACCTCCTTGACTCTCTGGTGTGTGCTGGAGGAAACGTGATGTCCATTAGAGACAAGGCAGCATTTCAAGCTTCCATAATAGGTCCAAAGAG
Seq C2 exon
GACCTTATTTGGAGCACTTCACCTGCACCTTGGAGGAGCACCTGAGGGCCCAGCTGGCACTGGAAAGACAGAAACAACCAAGGATTTAGCAAAAGCAGTTGCCAAACAGTGTGTCGTTTTCAACTGCTCTGATGGGCTGGATTATTTGGCCTTAGGAAAATTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144_MULTIEX7-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.140
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(75.9=59.5)
A:
PF127742=AAA_6=PD(17.9=55.6)
C2:
PF127742=AAA_6=FE(24.2=100)
Main Inclusion Isoform:
ENSMUST00000069293fB8917
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATCAATGCTGGTTTGCGA
R:
AAGGCCAAATAATCCAGCCCA
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types