MmuEX1008703 @ mm10
Exon Skipping
Gene
ENSMUSG00000041144 | Dnah7b
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46204218-46207693:+
Coord C1 exon
chr1:46204218-46204316
Coord A exon
chr1:46205419-46205456
Coord C2 exon
chr1:46207445-46207693
Length
38 bp
Sequences
Splice sites
3' ss Seq
ACATTGTCTTCTTCTTTCAGGAC
3' ss Score
12.42
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTGAAATATCCAAATGAAAATGAAGAAATTTTGCTACTTAGATCTATTATTGATGTAAATCTGCCAAAGTTTTTATCCCATGATTTGCCACTCTTTGAG
Seq A exon
GACTATCTTCAAAGTACTTGAATGCTATTGTGTGAAAG
Seq C2 exon
GGAATTACCTCAGATTTGTTTCCTGGGGTGAAATTACCAAAGCCAGATTACAATGAACTGCTGGCCGCCATCAGAGAAAACTGCCACACCATGAATTTGCAAATGACCGACTTCTTCTCTGAGAAGATCCTTCAGATCTACGAGATGATGATTGTGCGTCATGGTTTCATGATTGTTGGAGAACCATTTGGAGGGAAGACCAGTGCATATCGTGTTCTAGCTGGAGCATTAAATGACATTTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144_MULTIEX8-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(1.3=9.1)
A:
NO
C2:
PF077289=AAA_5=PU(19.4=33.7)
Main Inclusion Isoform:
ENSMUST00000069293fB8918
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATGATTTGCCACTCTTTGA
R:
TGCAAATTCATGGTGTGGCAG
Band lengths:
125-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types