MmuEX1008705 @ mm10
Exon Skipping
Gene
ENSMUSG00000101337 | Dnah7c
Description
dynein, axonemal, heavy chain 7C [Source:MGI Symbol;Acc:MGI:3639762]
Coordinates
chr1:46608886-46612732:+
Coord C1 exon
chr1:46608886-46608995
Coord A exon
chr1:46609339-46609410
Coord C2 exon
chr1:46612564-46612732
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCCTTGATTTCCAGACT
3' ss Score
7.72
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GAAAATAATTTAGAAACAAAGATGATCAATGCTGGTTTGCGATATGGCTATGAATATCTGGGAAATTCCCCTAGACTAGTCATAACCCCACTCACAGACCGCTGTTACAG
Seq A exon
ACTATTTACTTCCAGACTCTACCTACCCATGTTCAAAAGAACCATGTCTTCTGTTCACAGTGCACGTGCCTG
Seq C2 exon
GACCTTATTTGGAGCCCTTCACCTGCACCTTGGAGGAGCACCTGAGGGCCCAGCTGGCACCGGAAAGACAGAAACAACCAAGGATTTAGCAAAAGCGGTTGCCAAACAGTGTGTCGTTTTCAACTGCTCCGATGGGCTGGATTATTTGGCCTTAGGAAAATTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000101337_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.140
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(46.8=59.5)
A:
PF127742=AAA_6=FE(51.1=100),PF127742=AAA_6=PU(5.0=44.0)
C2:
PF127742=AAA_6=PD(0.1=0.0),PF127742=AAA_6=FE(25.5=100)
Main Inclusion Isoform:
ENSMUST00000189749fB8919
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAACCCCACTCACAGACCG
R:
ATAATCCAGCCCATCGGAGCA
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types