MmuEX1008713 @ mm10
Exon Skipping
Gene
ENSMUSG00000033826 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30663298-30668350:+
Coord C1 exon
chr17:30663298-30663495
Coord A exon
chr17:30664446-30664539
Coord C2 exon
chr17:30668274-30668350
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACTTCCTCCAACAAGTCCAGGCC
3' ss Score
1.24
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATTACAGAGATGATAACCATTGTGCAGACATACTCAGCCTTGAGCAACTCTACAATCGAAGGAATCGATATCCTGGGGATAAAGTTCAAAAACATCTACCAGGGCATTAAGAAGAACCAATATGACATCCTGGATCCACGGAGAACAGAATTTGACACAGACTTCACAGAGTTTATGGGGAAAATCAATATTTTAGAG
Seq A exon
GCCTACTCCAACAAGCCCACACCTACTCAAACAAGACTACATCTACTTGAATAAGGCCACACCCCTCAAACAAGACCACACCTACTACAACCAG
Seq C2 exon
ATTCAAATCCAGGCGTTTATGAACAGCACCTTTGGAAAGATCTTGTCCTCCCAGCAGGCTCTGCAGCTGCTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.6=100)
A:
PF083857=DHC_N1=PD(0.7=11.1)
C2:
PF083857=DHC_N1=FE(4.5=100)
Main Inclusion Isoform:
ENSMUST00000170651fB8927
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAAAAACATCTACCAGGGCA
R:
CCTGCTGGGAGGACAAGATCT
Band lengths:
174-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types