MmuEX1008718 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65831282-65834488:-
Coord C1 exon
chr11:65834099-65834488
Coord A exon
chr11:65833621-65833766
Coord C2 exon
chr11:65831282-65831786
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGCTTGGATGGGAAGGTA
3' ss Score
2.51
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGGAGCTGACCATGACCAGTGAGATGGAAAACCTACAGAATGCCCTATATCTAGATGTGGTCCCAGAGTCCTGGGCCAGGCGAGCCTACCCTTCCACAGCAGGCCTGGCAGCCTGGTTTCTAGACCTGCTTAACAGAATCAAAGAGCTGGAGTCCTGGACAGGCGACTTCTTGATGCCCTCAACTGTGTGGCTGACGGGCTTCTTCAACCCCCAGTCCTTCCTGACTGCCATCATGCAGTCCATGGCCCGCAAGAATGAATGGCCACTAGACCAGATGGCCCTGCAGTGTGATGTGACAAAGAAGAACAGAGAGGAGTTCCGGAGCCCTCCTCGGGAAGGGGCCTACATCTATGGGCTCTTCATGGAAGGTGCCTGCTGGGACACACAG
Seq A exon
GTATTCTGGGACTCAGAAGCCTAAGAACCACACAGATCTGAGGGGAGAAGCTGTCCCAATGGAAAGGTATCCCAAGTCACGGAGACCCAGGAACCGCACAGCTCTAAGGTGGGACAGTGTCCCGATGGAAAGGCATCCTGAGACAG
Seq C2 exon
ACTGGGATCATTGCAGAGGCGAAACTGAAGGACCTGACACCCCCCATGCCTGTGATGTTCCTCAAGGCCATTCCAGCAGATAAGCAAGATTGTCGAAGTGTCTATGCTTGTCCTGTGTACAAGACTTGTCAGCGGGGACCCACCTACGTGTGGACTTTCAATCTGAAGACTAAAGAAAACCCATCCAAGTGGGTTCTGGCTGGTGTTGCCTTGCTTCTCCAGATTTAACATCTTTAAGAGTCCTTGGGAGAAAAAAGGAGGGCCGCTCTCAGTTCCCTGACAGGCAAGTGGGTGGTGGGTGATAGATTATTATGAAGAAGTCATAAGCATTAAACCCCTGTAGAATTTCTCTAGGGAACTTGGAGGGCCTCAAGTGAGGCTGAGTTCCTCGAGAGCCCAGAAATAATGGGAGAATTCTGAGTAGTAAATTTTTCAAATAAAGTGATTTATTCAACTCTTCTAAGAACTGTTGTCATAAATAATGGTAAAGAGACCAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(18.3=100)
A:
PF0302810=Dynein_heavy=PD(0.8=62.5)
C2:
PF0302810=Dynein_heavy=PD(10.4=96.1)
Main Inclusion Isoform:
ENSMUST00000080665fB8931
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACTTCTTGATGCCCTCAA
R:
TTTCGCCTCTGCAATGATCCC
Band lengths:
251-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types