MmuEX1008797 @ mm10
Exon Skipping
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:162321687-162353723:-
Coord C1 exon
chr1:162353520-162353723
Coord A exon
chr1:162322711-162322771
Coord C2 exon
chr1:162321687-162321785
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTCTCACCACCGCAGTGA
3' ss Score
8.13
5' ss Seq
AATGTAAGG
5' ss Score
6.17
Exon sequences
Seq C1 exon
TGTTAAATCTAACGCTAATCGACCTACCTGGAATAACGAAAGTGCCCGTGGGAGACCAGCCGCCAGATATCGAGTATCAGATCAGAGATATGATTATGCAGTTCATCACGAGGGAGAACTGTCTGATTTTGGCTGTCACGCCAGCCAACACCGATCTTGCGAACTCGGATGCACTGAAGCTAGCCAAAGAAGTTGATCCTCAAG
Seq A exon
TGAAACTCCTTCCTCGTGTTTGTGGTGACACTGCTGTGGATATGCCCACTCCTCTGTCAAT
Seq C2 exon
GTCTGAGGACCATTGGCGTGATCACCAAGCTGGATCTCATGGATGAAGGAACAGATGCCAGGGATGTGCTGGAGAACAAGCTGCTGCCTCTTCGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.333 C2=0.099
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=FE(39.1=100)
A:
PF0035018=Dynamin_N=PD(3.5=28.6)
C2:
PF0035018=Dynamin_N=PD(5.7=29.4),PF0103115=Dynamin_M=PU(4.7=41.2)
Main Inclusion Isoform:
ENSMUST00000086074fB8984
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTGCGAACTCGGATGCA
R:
AAGAGGCAGCAGCTTGTTCTC
Band lengths:
144-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types