MmuEX1008880 @ mm10
Exon Skipping
Gene
ENSMUSG00000035711 | Dok3
Description
docking protein 3 [Source:MGI Symbol;Acc:MGI:1351490]
Coordinates
chr13:55528449-55530731:-
Coord C1 exon
chr13:55529161-55530731
Coord A exon
chr13:55528719-55528815
Coord C2 exon
chr13:55528449-55528554
Length
97 bp
Sequences
Splice sites
3' ss Seq
GGTGTCCACCCTGTGGTCAGACA
3' ss Score
2.87
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGGCCACAACCACGGTGGGCATGGAGCCAGGTGCCAAAGGTCTCGTGGATGTATTTCCATGTGTACTGTGTGACACCCCCACCCCCAAACAGCATTCCTCAGCTGGGTTACAGCATTCTTACCCAAGGTGACATTACACAGGTGACAAGATACTTCCATAATTTGTATTCATGCAAAGCCCCAATACTGGCCTCCAACAAGGCAGGTCAGGTGGGGTAGGGCAAAGCCACTGGGCAGGAAGCAACCCTTTAAAGCATGTGACCTCCCTGGGGAGCATACTGGGGGCCTGCCGCCTACACTCATGACAAACAGTGAGACTGGATATGGAGCCCTTGTGGCCTGCTGCCTAAAATGTCTGTTGTGTGGGGCTTCACTCTCCAGCCTTGGAGAGCAGTCAGGGAAGGCCTCCAGGAGGAAGCAGCTACCTGTGGCAGGGCAGAGCAGTGGTAAGGGGTGCCCAGAAGGGCCTCATCTGAAGAACTGCACTTCAGGGATTAAAG
Seq A exon
ACACTCAGATCCGGCTGATCCAGGTGCATGTGCAAGAGGAGGTCCTTGCCCTGCACCCCATCCCCGACCCCACTGGCCTCAAGCTCCCCATAGGCAG
Seq C2 exon
CCTGTACCAGTCTCCCCGGAACTTCAGAACTGCGGTGGCCATGGAGTCTGTGGAGCCCCCGGTCAAAGACGGCATCCTCTACCAGCAGCACGTAAAGTTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035711_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.091
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016924=PH=PU(12.8=68.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGTGGGGCTTCACTCTC
R:
GAAGTTCCGGGGAGACTGGTA
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types