MmuEX1009054 @ mm10
Exon Skipping
Gene
ENSMUSG00000027012 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:MGI Symbol;Acc:MGI:107750]
Coordinates
chr2:71260822-71263298:+
Coord C1 exon
chr2:71260822-71260947
Coord A exon
chr2:71261361-71261466
Coord C2 exon
chr2:71262648-71263298
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTGTTTCCAAAAAGAGT
3' ss Score
5.96
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GTACCAACTGCCAGCATTTCTGTGGAGGGCAACCCTGCTCTTAACCGTGTGAGATGGACCCACTCAGGAAGAGAAATTGCCGTGGGTGATTCTGAAGGACAGATTGTCATCTATGATGTGGGAGAG
Seq A exon
AGTTCATGTGTATATGTATGCCTGAGTATATGTATGTTCATTGTGCCGGAGCTTGTGGAGATCAGAAAAGGACATTGGATCCCTGGAACTGGAGTTACAAGCTGTT
Seq C2 exon
CAGATCGCTGTTCCCCGAAATGATGAATGGGCAAGATTTGGCCGAACACTCGCAGAAATTAACGCAAACCGAGCTGACGCAGAGGAGGAGGCAGCTACCCGAATCCCTGCCTAGCCTGAAAAGCGGCTGTAGCCTTAGCAAATTTGGCAAAAATGATTAAGTAGATCTCAAACTATTTGCATGCTTCTGATTAAATGAGTGTTAAAAGAAAATGCCATGGATAATCTGGGTTTAATACAGGAAGCAAAGCTTACAATGCCTTTTTATATTATATTCACTTTGTTTTGGATTGGTGTCATTTTTAATACAGCTGACAACTTTACAGAATGCAGCCTTTTCTGAATTCTAACACTTGGGTGTATATTGTTAATTATTCTTTTGGATTCTTTTGAACTTGTAATACTATATATAATTATTTCTAAAGCACAGATTAAGTAAGTTCTGCATATTTCTAAGTAGCCACAATTCCTTATTCCGCACTAAGTACATACCTCCGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027012-'54-56,'54-55,55-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.124 A=0.000 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000112142fB9178
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCAGCATTTCTGTGGAG
R:
TACAGCCGCTTTTCAGGCTAG
Band lengths:
251-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types