MmuEX1009148 @ mm10
Exon Skipping
Gene
ENSMUSG00000072813 | E330014E10Rik
Description
RIKEN cDNA E330014E10 gene [Source:MGI Symbol;Acc:MGI:3615333]
Coordinates
chr5:95775990-95801018:+
Coord C1 exon
chr5:95775990-95776085
Coord A exon
chr5:95790146-95790206
Coord C2 exon
chr5:95800705-95801018
Length
61 bp
Sequences
Splice sites
3' ss Seq
ATGACTTTTCTCTACCACAGGCT
3' ss Score
9.52
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCTTTTTGCTCCAGAGGAGTCAGGAAAACTTTCAGAGTTGTAGAACCTAAAACTTCAGCCTGTCCTTGCTTGCAATAGGAACACTGTCACCTCAG
Seq A exon
GCTGCCACAGACCACCACAGCTGGGTAGGAGAGTCCCTGGGATGTGGATTCTCAAAGTCAG
Seq C2 exon
GAGCCTTCTTCCTGAAGACCTGAGAGGATGAGTGGTCAGACCCCACCCACACTCCAGAAGCTAGCAAGGCAGACACTGCTGAGAGATGAGGCTTTGGCCATATCCTCTCTGGAGGAGCTGCCAGCTGTGGTCTTCCCACCACTGTTCCAAGAGGCCTTTGCTGGCAGACTCAACAAGCTCATAAAGGCAATGGTGGCAGCCTGGCCTTTCCACGATCTCCCTGTGGGGCCATTGATAAATATGCATAACCTGGAAACCTTGCAAGCTCTGCTAGATGGAGTAGACATGAGACTAACAAGAAAATTTCACCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072813_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.094
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAGCCTGTCCTTGCTTG
R:
AGCCTCATCTCTCAGCAGTGT
Band lengths:
137-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types