MmuEX1009490 @ mm10
Exon Skipping
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81610355-81611523:+
Coord C1 exon
chr15:81610355-81610616
Coord A exon
chr15:81610725-81610745
Coord C2 exon
chr15:81611410-81611523
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTCCCCCTTTATAAGTAA
3' ss Score
4.58
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGCCAGCAGCCTACCCCATCGGTCCAGCAGCCAGGCCTGGTGACTCCAGTTGCCGCAGGAATGGGTTCTGGAGCACACACAGCTGATCCAGAGAAGCGCAAGCTCATCCAGCAGCAGCTTGTTCTCCTTTTACATGCTCACAAGTGCCAGCGCCGGGAGCAAGCTAATGGGGAAGTGAGGCAGTGCAACCTTCCTCACTGTCGTACCATGAAAAATGTCCTAAACCATATGACACATTGCCAGTCAGGCAAATCCTGCCAAG
Seq A exon
TAAAGCAACTTTGTACACCAG
Seq C2 exon
TGGCACATTGTGCATCTTCTCGACAAATCATTTCACACTGGAAAAATTGCACAAGGCATGATTGTCCTGTGTGTCTTCCTCTCAAAAATGCTGGGGATAAGCGAAATCAACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024-'10-12,'10-11,11-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.000 C2=0.162
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PU(66.7=61.4)
A:
PF0213511=zf-TAZ=FE(8.0=100)
C2:
PF0213511=zf-TAZ=PD(32.1=66.7)
Main Inclusion Isoform:
ENSMUST00000068387fB9441
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGAGGCAGTGCAACCTTC
R:
TGTCGAGAAGATGCACAATGTG
Band lengths:
115-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types