MmuEX1009750 @ mm10
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107813546-107815708:-
Coord C1 exon
chr5:107815611-107815708
Coord A exon
chr5:107814061-107814122
Coord C2 exon
chr5:107813546-107813606
Length
62 bp
Sequences
Splice sites
3' ss Seq
ATATTTATTTTCCTTCTTAGAAA
3' ss Score
9.15
5' ss Seq
GTGGTATAA
5' ss Score
0.19
Exon sequences
Seq C1 exon
CACTTTCAGAAGGTCATTCCACATCAGTTTGATGGTGGCCCAGAAAAATTAATCCAGTCAGCTTACCAAGTCAAATACAACTCAAAAAAAATGAAAAA
Seq A exon
AAATTATAAAGCAAAAGTACAGAAACCATGATGCCTTATTCTCTGCTACGTCAGTATTTGTG
Seq C2 exon
ACTTGAAAAAGAATACACTACAATAAAAACTAAAGAAATGGAAGAACAAGGTGAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831_MULTIEX3-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.195
Domain overlap (PFAM):
C1:
PF138511=GAS=PU(16.5=54.5)
A:
NO
C2:
PF138511=GAS=FE(18.3=100)
Main Inclusion Isoform:
ENSMUST00000112642fB9623
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTTTGATGGTGGCCCAG
R:
TTTCACCTTGTTCTTCCATTTCTT
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types