MmuEX1010467 @ mm10
Exon Skipping
Gene
ENSMUSG00000095440 | Fignl2
Description
fidgetin-like 2 [Source:MGI Symbol;Acc:MGI:3646919]
Coordinates
chr15:101050194-101078567:-
Coord C1 exon
chr15:101078323-101078567
Coord A exon
chr15:101056962-101057926
Coord C2 exon
chr15:101050194-101054410
Length
965 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGTATGCATTCGCAGGTG
3' ss Score
8.96
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCGGGGTGGGGGTCCTGCCTGCGGGGGGAGCCTGGGCCGCCCCTTGTCCGGCCACCCCCACTGCCCAGTCCCGCTCCCGGCCGCGGCGGCCGCAGCAGCCGCAGCAGCAGCGGCCCCAGGATGGTGAGCGCCGCTGACCCCCAGCCCTGGCCCGTCGCCCCCGGCCCGCGCTTCCGCCCCGGTCCCTGGGCCGGACGCCCCCCCAGGCCGCGCACACTCACCTAGGACCCGGCCGGGATGCCGAG
Seq A exon
GTGCTCTTGCTGGATACCGGCACTTCCAAGTGCACACGGACCCAAGGCTGCACACACTCTTGCTTTCTGGTGTGTCTCCAGGCTCCTTTTGCTACCAGGTTTTTCAACTTGAACACAGGTGCTGGGGCCTGGCCTCCCTTCCTTTTTTTGTTCAACCCTGTCCTTATACACTAAGATTTAGACCAGATCTTTGTCCTTTCCCTTGCTGGGCTTGAGGGGAATGTAACACTCTAGAACCCAGCTCAGCAGAAGTTGCTGGAAGAACAGCTCTTGCCTCCCTGCTATCCTAAAGGCCATGTAACAGGTCATGGTCACCACGTGTAGACAGACATCCTCAAAAGAAGTGGTTCAGAGCCTGGCTGGCAGTTAGTGGGGACCTAGGGTCAAGGGAAGTCATCTTGGAGATATGAAGAGTACACTCACCAGGGGGAAGGACCTGGTGTACAGCAGTTAGGCTGGACTGATGATCCTGTGCTAGCTCGAGATGGGGATCTATTGAGGTGGGTGGACCGTCAAGCTTTTGGTCACGAGGTGGATACGGACGCAGATAAGAGTGAAAACAGGAGCCATGGTTTCGTGTTTCTTTTTTTCCTGGCTAACGTGGGGAGACCTTGACCTGAAGTGTTTGAGGAGAGCCAGCGAATGAGTGGTATAGGTGCCATGTCAAGCACGGGGTCTCCTGCAGAGGAAATTGAGGGCCGAATCAGTCTAGGAGAACCCGTCAAAGTGGAAACCTGGGATCCTTAGTCCGATGAGTGAGCGCCAGCGCTGCCTAGCGGAGGACTTGGGTGAAGACTGCTGGAGCCAAGGCTGGACAGTAAGAAGAGACACTGCCCGATAAGGGAGTCGAGGGTCGGGCCCAGGCCTGGACCTTCATTGTGCCCTTCTTCCCTCCGTTGGGTTTGTGTACCCAGGGGAGACGCGGTCCTCAAAGTCACATGTTTTTCCTCTGAGCCAGAACACAG
Seq C2 exon
CTCTGTTGAAGATGCACTGGACACCGGAACACGCCCAGCCCCTAAACCAGTGGCCAGAGCAGCACCTGGACGTCTCCTCCACCACTCCGTCGCCGGCTCACAAGTTGGAGTTGCCTCCAGGGGGTCGCCAGCGCTGCCACTACGCTTGGGCACACGACGACATTTCCGCCCTCACAGCCTCCAACCTCCTCAAGCGCTACGCCGAGAAGTACTCCGGAGTCCTGGACTACGAGCGCCCGGGCCTGGGCAGCTACGGTGACGCCGCCTTCCTCAACGGTGCCAAAGGGGACCCGGAGCCCTGGCCCGGGCCAGAGCCACCTTACCCTCTAGCCTCGCTCCACGAAGGCCTCCCGGGAGCCAAGGCGGCTGGCGCGGGTGGCTCCGCCGGCCTCGGGGGCTCCCCGGTAGTAGCTGGCAACCTGACTGAGCCGCTGTACACGGGCAACGCGTGCGGGGGACCGTCGGCGGCCACTGAGTACGCGGCGGGCTACGGAGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000095440_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000424=AAA=WD(100=19.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCTAGGACCCGGCC
R:
TAGAGGGTAAGGTGGCTCTGG
Band lengths:
358-1323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types