MmuEX1010935 @ mm10
Exon Skipping
Gene
ENSMUSG00000026829 | Gbgt1
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:2449143]
Coordinates
chr2:28498376-28502117:+
Coord C1 exon
chr2:28498376-28498441
Coord A exon
chr2:28499185-28499275
Coord C2 exon
chr2:28502067-28502117
Length
91 bp
Sequences
Splice sites
3' ss Seq
ACAGAATAATCCTTGTCCAGATG
3' ss Score
2.82
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GAAGTTTATCAAGGACTGGCTGCTGGTCTCCTACATACCCTATTACCTCCCCTGCCCAGAGTTCTT
Seq A exon
ATGTTTATAACAGGATCCCAGAGTTCTGGCCCATGATCAAGGAGCCGCTATGTTGAATTTGTTGATGGCTTTCTTGTTGGCAAGTCTCCAG
Seq C2 exon
CAACATGAAGCTGCCCTTCAGGAAGGAGAAACCGTTGCAGCCTGTGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026829_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(6.5=100)
A:
NO
C2:
PF034148=Glyco_transf_6=FE(5.0=100)
Main Inclusion Isoform:
ENSMUST00000163121fB10410
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAAGGACTGGCTGCTGGT
R:
TGTGTCACAGGCTGCAACG
Band lengths:
111-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types