MmuEX1011028 @ mm10
Exon Skipping
Gene
ENSMUSG00000035778 | Ggta1
Description
glycoprotein galactosyltransferase alpha 1, 3 [Source:MGI Symbol;Acc:MGI:95704]
Coordinates
chr2:35432514-35464398:-
Coord C1 exon
chr2:35464165-35464398
Coord A exon
chr2:35461195-35461253
Coord C2 exon
chr2:35432514-35432632
Length
59 bp
Sequences
Splice sites
3' ss Seq
GCTGACACCTTCCCTTGTAGACT
3' ss Score
7.25
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
CCTCCCCCATCAGTCACTAATTAAGAAAATGGCCTACAGCTGGATCTTAAGGAGGTATTCTCTTCATTGAGGTTTCCTCCTCTCAGATGACTTCAGTTTGTGTCAAACTGGCGAAACAAACTAGCCAGTACCACTGCATGGCTCCACATTCCTGAGCCGCTGTGTGGGGCCTACGACTCCATTCTGCTGCTGCTGTGTTCCACTGGGGTTTTCCAAGTTCTGCCGCTGTACTTG
Seq A exon
ACTCTTCTTGGAATGAGAAGTACCGATTCTGCTGAAGACCTCGCGCTCTCAGGCTCTGG
Seq C2 exon
GAGTTGGAACCCTGTACCTTCCTTTCCTCTGCTGAGCCCTGCCTCCTTAGGCAGGCCAGAGCTCGACAGAACTCGGTTGCTTTGCTGTTTGCTTTGGAGGGAACACAGCTGACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035778_MULTIEX1-2/8=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCAAGTTCTGCCGCTGT
R:
CATCGTCAGCTGTGTTCCCTC
Band lengths:
143-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types