MmuEX1012268 @ mm10
Exon Skipping
Gene
ENSMUSG00000092474 | Gm20478
Description
predicted gene 20478 [Source:MGI Symbol;Acc:MGI:5141943]
Coordinates
chr17:36168156-36171805:+
Coord C1 exon
chr17:36168156-36168256
Coord A exon
chr17:36168463-36168662
Coord C2 exon
chr17:36171316-36171805
Length
200 bp
Sequences
Splice sites
3' ss Seq
CCCGCGCGTGTCTCCGTCAGTAT
3' ss Score
5.6
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
CGGGACACGGCGGTCTCGAAATACCGCATCGAGTGTGGGCCGGGCCGGGACACTGCGGTGGTGAAATACCGCATCGAGTGTGGGCCTGGGGGCGGCTCGCG
Seq A exon
TATCAGGGCAGCGGCCAGCAGCAGGAGCAGCGTTCGCGGTGCCATTGCCCCATCTGGGAATGATGATACAGGAGATCTGAGGCCTTCAGGCTGCTTGGACTTTATAACCAGCGCCCGCGGAGGAGCTGTTGGTTCCTTCCCCAGGATCCTGCCACCCAATGGAGACGAGACCTGCCAGATAATTCCTGCTACCTCAGGAG
Seq C2 exon
AACCTGGTAACAATGTGATCAGTGTGGAGACCCAGTAGCAACTCTAGGAAAGTGTCCATGATTTTTACACATGAGGAGAACTGAGAAGCACCTGAAGCCTGTGCTGTTGCTTGCTGAGAAACTGACAAAGCTCTCCCTAGTCCACACCATCAGAGATCTGGGAAGGATGAATTTCTCCTGAGAAAGCGGGAAGTACAGACCAAGCAACTTCCAAATCTATTAAAAATGACAGACTTATCTGTTACCTAGACAACCACTGTGGTATACTGATTTTATTGGGAACAGAGGACCCAGGGAAACATCAGTCTCTTCTGCCCAGTCCAGAAGATCCAAAGCAAGGCCATCAACTCCCTAGTTGTCCACAGTTTGTCCAGGGTCCTGGTGACAGATTAGATGAAAGGCAGATTTTCACCCAGGCGGTCTGGCTTTGTCACCTTTAAAGCAAGCTCAAAGTGGAGTTCTTCTCTACCCCATCATCATCTGTGAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092474-'0-2,'0-0,3-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGGCGGTCTCGAAATAC
R:
ACTTCCCGCTTTCTCAGGAGA
Band lengths:
292-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types