MmuEX1012672 @ mm10
Exon Skipping
Gene
ENSMUSG00000102030 | Gm29106
Description
predicted gene 29106 [Source:MGI Symbol;Acc:MGI:5579812]
Coordinates
chr1:118178297-118202307:+
Coord C1 exon
chr1:118178297-118178423
Coord A exon
chr1:118179040-118179135
Coord C2 exon
chr1:118198722-118202307
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTCTGAATGGACAGGTG
3' ss Score
5.35
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTTCCATTGACATTCATGGATGTGGCTTTAGAGTTCTCTAAGGAGGAGTGGGAATGTCTAGATTCTGCTCAGAAGGCTTTGTACAGAGATGTCATGTTGGAGAATTACAACAGCCTGGTTTCTGTGG
Seq A exon
GTGTTGCTGTTTCAAAGCCAGAGATAATTACCTTCCTTGAAGAAAACAAAGATCCATGGATTGTTGATAGGAATGGAACAGAAAGAAGAGCACCAG
Seq C2 exon
ATCGGGAAGCTCAAGATACTCTTTCTGAGAGAACTAAATCCCCAAATCCTAAGACTCAGTACAGAATTTCTACTCGAGTGACATTTTACAAATGTATTGAATGTGGGAAATCTTTTACAAAGTTATCAAGTCTTAAAGTTCACCAGAGATTGTGTACTGGAGACAAACCTTACAAATGTAATGAATGTGGAAAATCTTTTAAACATTTGTCAAGTGTTAAAATTCACCAGAGATTGCATACTGGATACAAACCTTACAAATGTAATGAATGTGGCAAATCTTTTACCAAGTCCTCAAATCTTAAAGTTCACCACAGATTACATACTGGAGACAAACCTTACAAATGTAATGAATGTGGAAAATCTTTTACCCAGGTTTCATATCTTAAAGTTCACCAGAGAATCCATACAGGAGAAAAACCTTACAAATGTAATGAATGTGAGAAATCATTCTTCCAGTACTCACATCTAAAAATTCACCACAGATTACATACTGGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000102030_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.303 C2=0.035
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF097235=Zn-ribbon_8=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=2.9)
Main Inclusion Isoform:
ENSMUST00000186264fB10624
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGCCTGGTTTCTGTGG
R:
TCCAGTACACAATCTCTGGTGA
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types