MmuEX1012969 @ mm10
Exon Skipping
Gene
ENSMUSG00000102234 | Gm37885
Description
predicted gene, 37885 [Source:MGI Symbol;Acc:MGI:5611113]
Coordinates
chr1:182484179-182490012:+
Coord C1 exon
chr1:182484179-182484290
Coord A exon
chr1:182488561-182488705
Coord C2 exon
chr1:182489842-182490012
Length
145 bp
Sequences
Splice sites
3' ss Seq
AGGTTCTTTCCTCCATGTAGGTC
3' ss Score
8.87
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCCCCACCCATCCTCTGCCGGTACCTCATAGATGCCGAAGCCAATGGTGTGCATGTCCTCGCCCATCTTCCTCTGCCGTCGCCGGTGCTTCTGGATGAGACCCACCAGGAAG
Seq A exon
GTCCCAGGCATCAGGCTTGGCGCCAAGCATCGTTACCTACTGGGCCATCTCACTAGCCTGTGGGGTGTGTTTTACCCCAGAGGGCCCAATAGCAGAGTGAACGTGAGCTGGAAAAGGAAGGAGGGACCACGGACCGGACCATGAG
Seq C2 exon
CTGATCCAGAGAGTAAAAGAACGCCTGCAGCTGCCTCGGTGACCAGCAGAGGGCAGCGCGCGCCAGGCAGCTGCCGCCCTGGAGGCCCCACCCCGGACAGCCACGTGCTAGCAGGGGGCGTACCTCCTCGGCTCCGGTGACAGAGTACGCATGTCCTTTCACCAACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000102234_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTACCTCATAGATGCCGA
R:
GACATGCGTACTCTGTCACCG
Band lengths:
250-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types