MmuEX1013629 @ mm10
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr2:3504527-3511108:-
Coord C1 exon
chr2:3510993-3511108
Coord A exon
chr2:3508782-3509020
Coord C2 exon
chr2:3504527-3507749
Length
239 bp
Sequences
Splice sites
3' ss Seq
GTTCCCCTGTGGCCTTCCAGCCA
3' ss Score
7.96
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
TTCTTTTTCAGGTGGTTGGACTGGCAGCAAAACAAAGTAGAATAAGACATGTTTCAAGCACAGTAGTGAAAGTGAAACAGATCCTTGGCAGAAGGTATGGCATAAAGTACTTTAAG
Seq A exon
CCAGAAGTGTGGTCCTCAGACCTGCCTTCTCAGCAGAGTGCCCTGGGAGGAAAGAACCAGCAGGCTCCTGGAAACATGCTGAGAACACCCAGAGCTTCCCCACGCCTCGAAAACTGTGCCCTGCTGCCTGGGAGCTTGCTTCAGTAGCCTTCCTTCCCTGCCCACCATGGCAACCACTAATAGCAGTGCGGGCATCCGGTGGTCCAGACAGGAGACACGAACTCTTCTCTCCATCCTAG
Seq C2 exon
GGTGCTCTCAAGGGACCCCCAGCTACAGCAGCTCCCACCACCTTTTCAGAGGTGCAGTTGCCCCCTGTCAGAGCAACCCCATGACCAGACTGGGTGTGTCGAGGGAGTCAAGTCCCTGCACCAGCACCAGCCGCAACCCTCCTGGGGCAGCCTCCACACCACAGCCTCCAGGCTCTTCCTCAAGAGTTGCTTTTCTCTCTGGTGGGGATAGACCTCTGACCAGGGAGCCCTCTCCAAGGTGGGCCAGGCGAAGAAGGCGCTCAGTGGCCAGAACCATTTCATCTGAGTTGGCAGAAAACAGGAGGTTGGCGCGAGAACTCTCCAAGAGAGAGGAAGAGAAGCTGGACAGGTTGATTGCTATTGGTGAGGAGGCCAGTGCCCAGCAAGACACTGCCAATGAGCTGCGCAGGGATGCTGTCATCGCAGTCAGACGCTTGGCCACAGCAGTGGAAGAAGCAACTGGGGCTTTCCAGCAAGGGCTTGAGAAGTTGCTTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051396-'3-6,'3-5,4-6
Average complexity
C3*
Mappability confidence:
0%=0=0%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF138371=Myb_DNA-bind_4=WD(100=48.4)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTGGCAGCAAAACAAAG
R:
TCCCCACCAGAGAGAAAAGCA
Band lengths:
308-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types