MmuEX1013997 @ mm10
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39056060-39063504:-
Coord C1 exon
chr2:39063242-39063504
Coord A exon
chr2:39061934-39062600
Coord C2 exon
chr2:39056060-39056150
Length
667 bp
Sequences
Splice sites
3' ss Seq
ACATCTTGTTTTCTCCATAGGCA
3' ss Score
11.6
5' ss Seq
ATGGTCAGC
5' ss Score
4.01
Exon sequences
Seq C1 exon
ATCTTGTGTTGCCAAAATTCTTTGGCCCACATTTAAGTGGGATGCAGCTAGCCTGGAGGTGTGAATGAATTTCATTCACTGAGAAGTCTAGGGGTTAGTTAACCCTGAAAGATATCCACACAGCAAAAATGTTTGCAAAACTAAAGAAGAAAATTGCAGAAGAGACTGCTGTTGCTCAGAGACCAGGCGGCACAACAAGGATCCCACGCTCTGTGAGCAAGGAGTCTGTGGCCTCCATGGGAGCTGACTCTGGAGATGATTTT
Seq A exon
GCACATAAATTTTAAGTCACTGTCTGTGAATTGTGGTCTTGAATTAGCCAGAGTGCAGTTTATTGGGAAAGTTGATGGAAAATTATCACTATGGATTCAGTATCCTATTTTGTTCATAAAGTGTGTGTGTGTGTGTGTGTTTGGTAGGATTTCACAGTATGCTGCTTTTATCAGAAAAGAGAATAGCTTGAGGATTATACTAACTTAAATGATTCTTTAAGGAATTTTAGTGCTTGACATATTCATATATATAAATATATATAACATAAAAGCAGGTTTATTCTCCAGGTCTGCGAGGAGAGAAAGCATGTAAAGAGCAATGTATATGTAAAGTGTAAGTCATGAAGCAAATCTAGTGCCCGTGTAAGAAGTAGAACGTTAATAATGCTGTTAACGCCACTTAGGTGCTACTTCCAAATTCCCCAACTGTGCCAGAAAGGCGGTAACCTAAACTTTGTGTTTATCATTTTCTTGCTTTATAAAATATTTAAACATTTATGTTTGAGCTCATAATTTATTATTTCTTTAACTCAACATTTTCCCAGAGTGCATCTTTGTTCCCTGAAGGGATGACTCACTTATTTTTACCTTTACTAAAATGTCACCATTTGAAAAGTCCGTGTTTTATCCTCCTTCTTCAGTGATTGACATTTGAACTGTTTCCATG
Seq C2 exon
GCTTCCGATGGTAGCAGCTCCAGAGAAGATCTCTCATCCCAGCTTTTGAGAAGAAATGAACAGATACGGAAGTTAGAGGCCAGACTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.000 C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000039165fB10726
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGTGTTGCCAAAATTCTTTG
R:
AGTCTGGCCTCTAACTTCCGT
Band lengths:
349-1016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types