MmuEX1014009 @ mm10
Exon Skipping
Gene
ENSMUSG00000042532 | Golga7b
Description
golgi autoantigen, golgin subfamily a, 7B [Source:MGI Symbol;Acc:MGI:1918396]
Coordinates
chr19:42249990-42256183:+
Coord C1 exon
chr19:42249990-42250091
Coord A exon
chr19:42253068-42253151
Coord C2 exon
chr19:42255891-42256183
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTCTTTCTTTCAGACC
3' ss Score
13.39
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
AGAGTCCTGCTGACCTGGGAAGGAGTGTCACTGACATTCAGTAGGGCGTCCAACATAAATCTGCCGCTGCTTTCTTCTCAAAGGACTGGGTTTGGAAGTCAG
Seq A exon
ACCTCTACCTACATCTGTCCTTATTAAGAAAGTTTCCCGTGTGTATTCCTTCAGAAATCACCTCCTTTTGACCTTTGACCCCAG
Seq C2 exon
GAACCCTGGCAGCAGGCGATCGGGTGGTGAGGAGCCTCCGGCGCGGCCTCGCCTCCCCGGTCCGGCTCCCGCGTCAGCACCGTGGACAGCACGGACCACCTTTCAGGGACCCTCCGGTCGGCAGGAGCGCGCTTCAGGTTTCGGCGATCTCATCAGTACCGCGGACAGCGCCCAGGCCCTCGCTGGCCTCGGCCAGCCCACCGGCTCTTCCTATCAGCACCGCGGACAGCCCCCCTGAACCAGCCCAGCGACAGCCAAGGACTGGTCAGAACGCCCTGAAGATGGCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042532_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTCAGTAGGGCGTCCA
R:
GAAAGGTGGTCCGTGCTGTC
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types