MmuEX1014302 @ mm10
Exon Skipping
Gene
ENSMUSG00000036890 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2444269]
Coordinates
chr2:44825351-44927657:-
Coord C1 exon
chr2:44927142-44927657
Coord A exon
chr2:44860291-44860326
Coord C2 exon
chr2:44825351-44825543
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTTGTGATCTTGCAGGTA
3' ss Score
11.77
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGCCGGCTAGCCACCTGCCTGAGAACGTGCGAGCCGGTGAGTCAGCCCCCAGACCTCTCAGGGGAAGAGAAGGCCGCAGCGCGAGCGAGCGGAGGCAGCGACCAGAGGAGTGAGAGAGAGTACGGAAAAGCCGAAGGGGCGGCGGGGGCGCTGGCCTGACTGGAAAGCGTACGCGGGGCCCGTGGGCGGAGAGCAGGTGTGAGGAGCCGCGCCACCGTGGAGAGTTCGCCCAGCACCGCGCGTCCTCTGAGTCACCGACTAGGCGTGGAGGCCGCCGTCCGGGGGCGGAGCCTCAGGCTTGTGGGCGGGGAGGGGCGGGGCGAGGGCGGGGCCGGCGCCTGACGCGCCCCAAGGCCGCGGCAGCCGCAGCGGGGAGGGGCTGCGGCCTCGGTGGCGGCCGCGGGGGAGGGGCTCGGCGTCAGCGCGTCGCCAGCTGGGCTGTCGGTGGCCTGGAGGGAGCCGTGGAGGAGGAGGAGGAGAGGAGGAGGAGGAGGAGGAG
Seq A exon
GTACAAGATTGGATATCAGTTCATCTGGATCAGAAG
Seq C2 exon
GTTTGAACAGGCCAATGAGTATTGTCATCATCGAGGCATTTTATGGAGGCTCCCATCGACAGCTGGTAGAGCTGCTCCGAGAAGAATTAGATGACTGCGTGTTGTACACTCTTCCTGCAAAGAAATGGCACTGGAGAGCACGCACAGCAGCCTTATACTTCTCACAGAATATTCCCAGCAGTGAGCACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036890_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF120383=DUF3524=PU(92.2=98.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGAGGAGGAGGAGGAG
R:
TCTTCTCGGAGCAGCTCTACC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types