MmuEX1014396 @ mm10
Exon Skipping
Gene
ENSMUSG00000060550 | H2-Q7
Description
histocompatibility 2, Q region locus 7 [Source:MGI Symbol;Acc:MGI:95936]
Coordinates
chr17:35442678-35443643:+
Coord C1 exon
chr17:35442678-35442794
Coord A exon
chr17:35442967-35442999
Coord C2 exon
chr17:35443349-35443643
Length
33 bp
Sequences
Splice sites
3' ss Seq
CACAGCTTTCCTTCTCACAGGTG
3' ss Score
9.73
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTGACCTTGGAGCTGTGGCCATCATTGGAGCTGTGGTGGCTTTTGTGATGAATAGGAGGTGAAACACAG
Seq A exon
GTGGACAAGGAGGGGACTGTGCTCCAGCTCCAG
Seq C2 exon
CATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTAGACAACAGTGTCTCATGTTCCCTGTGAGCCTATGGACTCAATGTGAGGAACTGTGGAGCCCAGCCTGCCCTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060550-'7-15,'7-14,8-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF066236=MHC_I_C=FE(78.6=100)
C2:
PF066236=MHC_I_C=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTGGTTGACCTTGGAGC
R:
TCTGTCACTCAGTGCAGTCCA
Band lengths:
114-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types