MmuEX1014665 @ mm10
Exon Skipping
Gene
ENSMUSG00000021366 | Hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:MGI Symbol;Acc:MGI:96100]
Coordinates
chr13:42055400-42123213:+
Coord C1 exon
chr13:42055400-42055542
Coord A exon
chr13:42122115-42122179
Coord C2 exon
chr13:42123160-42123213
Length
65 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTGTTTTTGTCCTAGGTC
3' ss Score
10.29
5' ss Seq
CAGGTCAAG
5' ss Score
2.98
Exon sequences
Seq C1 exon
CATGTGGATTAACTGATGGCCAACGAGTACATGGAGCCAGCCTTTTGTAACCTGCTCTTCCAACAGTTTCTAAGAAGAAAAGGGAGCTCTTAAATCTAAGAAAATGCCTCGCACGAAGCAGATTCATCCCAGAAATCTCAGAG
Seq A exon
GTCCTTTTCTGTCACTGCAATGAAATGCATCAGGCTGGTTCTTCTAAGGAAGAAGGCTTATTCAG
Seq C2 exon
ACAAAATCGAAGAAGCACAAAAAGAGCTTAATGGGGCAGAAGTTTCCAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021366_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000060148fB11162
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGAGTACATGGAGCCAG
R:
ACTTCTGCCCCATTAAGCTCT
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types