MmuEX1014729 @ mm10
Exon Skipping
Gene
ENSMUSG00000067438 | Hmx1
Description
H6 homeobox 1 [Source:MGI Symbol;Acc:MGI:107178]
Coordinates
chr5:35389117-35399730:+
Coord C1 exon
chr5:35389117-35389489
Coord A exon
chr5:35391738-35397685
Coord C2 exon
chr5:35399678-35399730
Length
5948 bp
Sequences
Splice sites
3' ss Seq
TGCCCGTTTCTCCCCTGCAGCAA
3' ss Score
11.62
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGCCGGATGAGCTGACCGAGCCCGGGCGCGCCACACCAGCTCGCGCCTCCTCCTTCCTCATCGAGAACCTGCTAGCAGCCGAGGCCAAGGGCGCGGGGCGCTCAACCCAGGGCGATGGCGTCCGCGAGGAAGAGGAAGAGGACGACGACGACCCCGAGGACGAGGATCCGGAGCAGGCGCGACGACGACTACAGCGGCGGCGACAGCAGCGCGCGGGCAGCGGGCCGGGCGGGGAGGCGAGGGCCCGGGCACTGGGCCTAGGGCCCCGGCCGCCTCCTGGGCCCGGCCCGCCCTTCGCGCTCGGCTGCGGAGGTACAACGCGGTGGTACCCACGGGTGCACGGCGGCTACGGAGGTGGTCTAAGTCCTGACA
Seq A exon
CAAGCGACCGGGACTCTCCGGAGACCGGCGAGGAGATGGGCCGCGCAGAGAGCGCCTGGCCGCGGTGCCCCGGGCCGGGAACCGTTCCGCGGGAGGTGACGACGCAGGGCCCGGCGACCGGCGGGGAGGAGGCGGCGGAGTTGGCCGAGGCTCCAGCGGTGGCGGCGGCGGCGACAGGGGAGGCGCGCGGTGGCCGCAGGAAGAAGACGCGCACGGTCTTCTCGCGCAGCCAGGTCTTCCAGCTCGAGTCCACTTTCGATCTGAAGCGCTACCTGAGCAGCGCAGAGCGCGCGGGCCTCGCCGCCTCGCTGCAGCTCACGGAGACGCAGGTCAAGATCTGGTTTCAGAACCGCCGCAACAAGTGGAAGCGGCAGCTGGCAGCGGAGCTGGAGGCGGCCAGCCTGTCCCCGCCGGGTGCGCAGCGCCTGGTCCGCGTGCCGGTGCTCTACCACGAGAGTCCCCCGGCCGCCGCGGGGCCCGCGCTGCCTTTCCCGCTGGCGCCGCCCGCACCCGCACCGCCGCCGCCGCTGCTTGGTTTCTCGGGCGCGCTTGCTTACCCGCTTGCCGCCTTCCCTGCCGCCGCCTCGGTGCCCTTCCTTCGCGCGCAGATGCCGGGGCTAGTGTGAGCCGGCGCCCTCCATGTAGGAGGCGGTTGGGGGAAGGCGCCGCGCACCTCGCAGTCCCTCGAGCGGCCGTCTCCGTGGGCAGCTGCTCTACAGTGTACCGGACAGCGGCGGCAGCCGGGACTCGCAGCCAGCTGCAGGACTGGAGACCCGTTCCGATGGAAAGCCGCGGCGATGCGCTAGCTCTCGCCGGCACGGAGTGCTGAGCAGATGCCGGCTCCGAGTCAGCAAACGGACACTTGGAATGGGCTGGCCGAGGAACCGTATGGCGACTGTCCCGAGGCATCCTGGCCCTAATTCACATTGTCCTTTTCTCGGGAGGGATCTTGCAGGAACCCAGACATCAGGGGCCCCTTCCAAGGGACAGTACAGAGTGCTGCGGGCCTTGGGACAACTCATCTTGGGCCTCTTTTCCGAAGAGGGCTTCTCTCTTGGCGGCCTTGGTTCTCTTGGCTTGACAAGACTTTTTTTTTTTTTTCTGTGATAAATCTACTTCTTTGCATATGGAATAAAAAGGGACGTTTTCTTGATGGACTCGCAGCTGTGTGGTCGCTAGGACAGAGCCGCTTCTTGTAGCAGGCCTGAGTGTGTGGTACTTCCCTCCCAAACCTGGCTAGGGACTTTGGAAAGGCTGCCCCGGGGTAGGTGGGCAAGTCAGGCTGGAGCCACCCTCCTGGTTTATGATCCTAAATTTTACTCTGCTTGTGACTGAGAGGCCCAGCTACACTTCTGGGGAAGTCTTAGGGGTCCAGGAGGAAGGAATAGAGATGGAAAGATGACTGTTGTAGGACTGAAACCAAAGGCATGGCAGATGAAGGTAGGGCTCTCTGGCCACCAACTCCGTCATGGGAGTTCATGAGGCTGTGTGGCCGCTGCCCTTACCTGCACTTGGGACACACAGCAGGATGTGTGTCGAAATTCTTTGATCTGAAACAAAGCTCTGGCTCTTCAGCAGGGCACTGGGGTGCTTGCTCCTGCCTCCCCTGGTCATTGGAACCCTCTGTGTGCTCTCAGGGGAAGTTGCTTGAACAGTGTTGGACCACCTGGGTCACACATCTCCATTGCCCCCATACTGACTTGTTCCTACCTACAGGTGTGGAGTGGTGCTTTATTTGGTGTGCTTTTGAACCTAATTGGGAGAGGACATTCCAAATTTGAAGGGATCTGGTCACTCCCAGAGGACCTTGGAAAACCTGTCTTCCTCCCTGCTCCACCTGGAAGCAGACACCCCACAGAGAAGATGTGCAGCCATCAGTCCACACGGGGCCAGGGGCGCCCAAGGTGGCGCCAGACAGCCTAGAAGAGGCGCCAGGGGCCTGGGGGAGTCAGTCTGTCTTAGGAGTGAGTGTGTGTTTTCTTGACCCCACCCCAGTATAAAGAGCGAGTTTCCAGTATGGAGACCTAGGTGGTGGTGCTCCATGGAGCACCTCTTCTATCTGCTGCTGCTCTCGTTCATATGCCCCGAGAATTGTATATTTTGAGATTGGTGTGGAAGGGACATTGGTCCTTGACCATCTTTGAGTCAGCCTTCCATATCAGTCAGCCAGTCAGAGTTTGGAGCCTGGGCATTCTTCCTCCTTGGGACACTCAGAACTGCTTTGCCATGAGTAAACCAGCTTTTGCAGGCTTTGTCTGGGAGAGACAATACACTTCGGTGAGTTTTATTTTTTTCAATGGAGTTTTCGAAAGCCTTGAATCCCCCGTCAGCAGGCACACAGGCTACAGGCTGTCCCCAGACAGAATGGGCAGGCCTACCTCTCCCTCTCCCCCTCAACTCTCCACTGTGCCATCACCAGACTTTGGTGCCCATGGCTTTGTGGCTGTTTTTGTTCTGTTCTCAGGATAAATGTCTGACTGTCCTGGAAAGGATCGGGTGCAGCCAGCGGCAGCACTTCTCAGACACTAGCACAGCACAGGTTCCCACAAGCAGTGGGACTCTTTCCTGTATACACAAAGGTGCTTCCCATGGCACCCCACACCCCAGCGGTCCAGGTGGAAATGCTGGCTCCACTGTCAAGGTCTCAGGGGGCTCAGGTCACTGGCCCCCCTCACTTTTCAGCCCTTTCAAAATGCACAGTTAAACCCAGGACGAGGAACTCATTGTGAGACCACCGTTTCTCTCCAATATCTTGGGCTGAGATCACACACTGATCACAAGGTGTCTTCGGCCCAGCAAATGTGTCCTCATCAGAATGTCGTACCAAGACACAGTGAAATATCCTTGGAGAGTCACTTGCCACAAGGAGCCACAAGGGACAGTATCCTATGGACACCTGCAGTAGAACCTTGCTCCATCAATTGGGGAAGTGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACACACACACACACACACACACACACACACACACACACACACATATATATATTAGAATTAGCATCGCTGGGCAGGAGAGCTTCCCACCTCCCTAATCATCCTGTAGCCTCCTATGGCAGTCTTAGTCACTCAGCAGGAACATGGTCCCTCCTAGAGCTAGGAACTGGATCCAGTGATGCAGTAGGAAGCTCCCCAACTAGTTCAGCTTGCCAGACTTAGGCAAGCTCGCCATGCCCCATAAGTATCCACCAGCTTCTGGGGTGCAGTGTAGGAAGGCAGCCCTAAGCAGAGAGACCTGATTCCAATTCAACAGGCAACATTCAAGTCCTAGAGGGTGCCAGGCCTGGCTGGGGGCCTTCGTGAGTCCGGGATCCTGGCATCGATTGCAGGCACACCTCCTTGCATTGACTGTTGCTGGCAGAAGATGAATGGTTTCGATCTGTCTCTGCCAGGTGAGCTTAACCTCTCACTGGTTTCTGGTCCATCCTCCTTCGCAGCTAAGTGAGGTCCAGCTGCCATCACTCTGAACTGCAGAGGCTCCTGCTCATGAGATCCAAGTGGTCCACCTTAGTGGACCCTGTCCTACTGGCAAGAGAAGTCTCACGGCCAAGCCCTATTTTCGAGCCCCCAGGTTCCCCATCACAAGCCATTTGGCACATAACTCTCTTGATTCTGTATAAGAAACCAACAGTGTTCTTGCTGGAGCAGGGCACGTGAGGTTCCCAGCCGGTCAGAGTTTCCTGAGTTTCTACCAGGAGTATGGAAGCAGCCCTAGGCTAGCTCTAGGTACTGGACAGGGTGGGGTGGTGGCTCAGAGAGTAAGGACATCCAGGAAGACTCCATGCTTTGTCCCAAATCAGAGCAAACAACAGTAGGCATGGGAACAATGAAGTCTTCCCAAGAACTGCAGCCCTACCCTGACAGCTGCAGGAAAGCTGCAGGACAGACAACTCTCACACAGTCACACATCCGACTGCTCAGGGAGGAAGCTCCCCAGAGCAGGGCTCTGCCCTCACCCAGAAAACAGCCCAGCTGGGCTGAGACCCAGGGGCTGGGCACTGGCCAGGTAAGCTAAGCCTTATTTTCTCTTTCTCTCTCTGGCCTGCCTTCTGTTGCCCAGCTCCCCTCCTCCAACCCCTCAGCAACAAGGTAGAAAATGAAAGCAGTGCTTCGCTGTAGCTTGGACTCTGGGCCGGAAAAGCCACTGGGAGGCCGGCCTCCAGCCAGAGAGCAGCTCCTGCGGGTTCTCTAGGACTGGGCAGTCCAGTGCTGGAGAAGGAGGGAGGCCCCTTTGATACAATGAACTTGCTCAGCTACCAGAGCAGGCATTCACCAAAACGCCATGGAGAAAGGACTTGGGAGGATGGGGTCCCAGGAACTCCGCTAGTCAGCTAGCCTGGAGCCAATTCCTGGGTGTCTGGTTGCCCTGGAAGGAAAAAGGAGAGGTGGCTGTCCCCTTGGCACATCTGTCCTCATAGCATATGCTCACTCTCAGTCGGTTGCCCACAGGTTCCAGGACTGAGGGAAAATGGGGACAAGCTAGGGCTTCCTGTGGGTTATTGGGGAAGCTAGGAAGAGCAGGGTTCCTGCAGGAGCTGGGTTTGTTTGTTTTGTTGTGTAGTTTTTTAAAAAATTATTATTATCGTAAAGGTGTTTGTAGGTATTGTTACCCAGTCAGTTCAGTAAAACCAGAACAGAAAAACAAACAAAAAAACAAAACAACAAAATTATGTGTCCTGCCACCATACATCAAAGCCAGATTAAGAATTTATTGGGACTATGTTTTATTAGTCAGACTGTTACCTTAAAAATAAAAACAAAAAATTAAAGTGCATTTAATTTTAAAGTAAATTGCATAAGTTTATACATTTCTAAGTTTACCAATGAAATGATATGATGTTGGTTTATCTAAAATACGCAGCAAAATTAAAAGGGGAATGGAAGAGAGGCGCTTGATTAGGAGTCCGTACTTGCGGAAGGTCCAGAGGCAGGCTTGAAAATAAACCTAAGTAAATCTGTTTAACCAGACCGTGGAAACGCGAGGATTTGTGCTGGGGGGGGGGGGGGGCCGGGGGGCGGGCGGGGCGGAGAAAGGGTGACTTTCCACCCGAGAAGCTGCAGTACGTTCCAATTTTATTTTCACCCAATCTGAGTCTCACCTGGGTTCACTTAAAACTCGGCTTTTAAAAAGCTGTGCATCCTCGCGGCTTAGCTAGAACTTGACCGTTAAAGCTCACATACTTAGCTTTACAACTATTTTGGTCTCAAACAACCCCCTTTTCTCCCCACGCCGCTTTCCGGGGTTTCATCCCTCTCACTCTGGTCACGGTGACCGCACCGGACTCCTCACCCGGGGTCCGGGCGCCTTGGAGGGGGCAAAAGGGCTTAAAGGTCGCGACCTTGCAACACAGTGTGGGGTAGTGCCCTGCGGCCGCCTTTCTGGTCTGGGATCTAGGTCTTCTGTTTCTGGAGCACCGGGGATCTGCGGCGCAGAATGCGGGAAGGAGGCTCGGGGCCCACAGGCGACACTCGCGAAGGGTGGATGGAGAAGGGCTGCATCCGGACCTCCGGGAAGCCCTGGGCTGGAGACCGCTAAACAGACCAAGCACCCGTGGGCTCTGCGTGATCCGGGATTGCAGGGGCACCACCTCTGCGGATCCAGACGCCTGCTAGCCATGGTTCTGCGCTCGCCCTGGAATGTCTCCCTTCCCCGCCCTCCGCCTGCTGGTTCTCTTGGTTCGCCCGGGACACAGCGACGTTATTCTCCCGCTCGACTCTCCCCAGTGGCCGTGATCCTTCTTCTCACGCGTCCTGCCATGCGGGAAGTGACTCCTTCCCTGCGACGGGCGCTCTGGTTTCTTGGTCCTGCCTCCCACTATGGGTCCCGGACTCCGCGCGCTTCGACCCACCGGGCTGCGGACGCGGCTGCATATCCCGCGTCAGCACCTTTCCGCTGGTGCCACGAGGCCCTGTTTCGCCATCAG
Seq C2 exon
AGCCGCCCCTCGGCCCTCCACCCTCCGCCGCGCCGAGGACCTCGCCCCTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067438_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.394 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=WD(100=27.3)
C2:
NO
Main Inclusion Isoform:
ENSMUST00000172923fB11199
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types