MmuEX1014779 @ mm10
Exon Skipping
Gene
ENSMUSG00000000938 | Hoxa10
Description
homeobox A10 [Source:MGI Symbol;Acc:MGI:96171]
Coordinates
chr6:52231197-52240854:-
Coord C1 exon
chr6:52240278-52240854
Coord A exon
chr6:52233959-52234427
Coord C2 exon
chr6:52231197-52232780
Length
469 bp
Sequences
Splice sites
3' ss Seq
CTTCGTGTTCTTTTGCGCAGAAC
3' ss Score
9.17
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
GATGGCTGTGACAATGTGGTCGTAAACCCGTCCAGGGCCGGCCAATTTGCATATTTGGAATGCGCCGCTATAAACCCGGCTGGGGTTTTGCAGCAATTTCTTAGATGTAAAAATGAGATCTCAATAGCAGCGGGTTGGGCACATTCTCTTGCTCTTTCTCTGCCCGGCCAGCTTCCTTTTCTGGGCCGCAGGCTGGATCTCCAGCCTCGCCTAGGCTCGCAGCCGCCACGAGATGGCGCACTCCCGATCAATGTCAAAGCCGCCAGGGAGCCCGGAACCCCAGCGAGATTCTTGGCCTTTGTTCGCTTCTGATACTAAGAGCAGCACGGTACGTTATTTCACTTGTCCGGCACCCCTTCGTATTCAAAAAGAGGGGGGGCCCCCGCGCTCAAGAAGTGATTGAGGCTGAAATTTAAAGCAAAGCGCCTTCGTTAGGCCTTTCCGCATCGCGGCGTGGAGAAGCTGCTGCCCCTTGGCAGTGATTTCTGAAATGAGTCAAG
Seq A exon
AACATCAAAGAAGAGAGCTCCTACTGCCTCTACGATGCTGCGGACAAATGCCCCAAGGGCTCGGCCGCCGCTGATCTGGCCCCTTTCCCGCGGGGCCCGCCGCCCGACGGCTGCGCCCTGGGCGCCTCCAGCGGAGTGCCAGTACCCGGCTACTTCCGCCTGTCGCAGGCCTACGGCACGGCCAAGGGCTTCGGCAGTGGCGGCGGCGGCACGCAGCAGCTCGCTAGTCCCTTTCCTGCGCAGCCCCCGGGGCGCGGTTTCGACCCGCCGCCCGCACTGGCCTCTGGCTCGACCGAGGCAGCCGGGAAGGAGCGAGTCCTAGACTCCACGCCACCACCCACTCTGGTTTGCACCGGTGGCGGCGGCTCGCAGGGCGACGAGGAGGCACACGCGTCATCCTCGGCGGCTGAGGAGCTGTCTCCAGCCCCTTCAGAAAACAGTAAAGCTTCGCCGGAGAAGGACTCCCTGG
Seq C2 exon
GCAGTTCCAAAGGCGAAAATGCAGCCAACTGGCTCACAGCAAAGAGCGGCCGGAAGAAACGCTGCCCTTACACGAAGCACCAGACGCTGGAGCTGGAGAAGGAGTTTCTATTCAACATGTACCTTACTCGAGAGCGGCGCCTAGAGATCAGCCGTAGCGTCCACCTCACGGACAGACAAGTGAAAATCTGGTTTCAGAATCGCAGGATGAAACTGAAGAAAATGAACCGAGAAAACCGAATCCGGGAGCTCACAGCCAACTTTAATTTTTCCTGATGAAACTTCCAGACAACGTCTTTTCGCTTCCTGAGCGCCTGGACCCATCCTCTGCCTCCAGCCTCTGCCCCAGAACTCACACCTGTGCCGGAGCCCCTTTCTCCCTCCCACACTCGCCATCTCCCAGGCCGTTTCGTCTGTGCAGGGCTGGTTTGTTCTGGCTTTTTTTGTTTGTTTGTTTCTTTGTCTGTTTGCTTGGTGTTTGTTTGCTTGTTTTCTGGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000938_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.696 C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=62.0)
Main Inclusion Isoform:
ENSMUST00000121043fB11224
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACTCCCGATCAATGTCAA
R:
GTCTGGTGCTTCGTGTAAGGG
Band lengths:
349-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types