MmuEX1014788 @ mm10
Exon Skipping
Gene
ENSMUSG00000085645 | Hoxb5os
Description
homeobox B5 and homeobox B6, opposite strand [Source:MGI Symbol;Acc:MGI:1922645]
Coordinates
chr11:96291024-96306910:-
Coord C1 exon
chr11:96306737-96306910
Coord A exon
chr11:96293375-96293554
Coord C2 exon
chr11:96291024-96291265
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTATATCACTCTAGACG
3' ss Score
7.97
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATGTCATAGCGACTTTTGGGGTAGTTTGCTTTCGGCAAAGGGGGACAAAGTCATGGGGTGAGAGGGAAGGAGGACCCAAAACAGCCTCCAAGACCCTCACCATCTCTTCACCGGCTCCCCCTCCCCCCCCACAGGTCCTGTAAGAAGTTGGGCCCAGCTGGAAGGGATTGACCG
Seq A exon
ACGCCTCTTCGCCCTAGGCTGGCCTCTGCGGAGATTCCAGGCCCCACAGAGACCAGGACTTCCCTCAGCGCCACCGCCCCTCGTGCCAATGCAGCCGGGAAATCGCCATTACCCACACTGGGCAAGAGAAACCGCACGGGGGCAATCGGAGAGGCCAGGAAAAGGGAGAGATGGAGGGAG
Seq C2 exon
AAGGTTCCAGGTTGGCCGTACTCAGGAGCAGGCCGAACGGCCCAGAGGAAGCCCTGGCGTCCGGTGCTGCCAGGCTCACTGCGGACGCACCCCAGCCCGGTAAACTCACTGTCGCTCGCCGGGACTGGTTTCCCTTCAATTTAAAAATTTCATGTGGATCGCCCATGCCAATTTAGAATGAAATAGATTTAAATACATAAAGTAAAAATAAATTGAAATAAAAGCAAGGCATCTGATGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085645-'0-5,'0-2,6-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATGGGGTGAGAGGGAAG
R:
GAGCGACAGTGAGTTTACCGG
Band lengths:
243-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types