MmuEX1014796 @ mm10
Exon Skipping
Gene
ENSMUSG00000101174 | Hoxd4
Description
homeobox D4 [Source:MGI Symbol;Acc:MGI:96208]
Coordinates
chr2:74711929-74722631:+
Coord C1 exon
chr2:74711929-74712316
Coord A exon
chr2:74722050-74722177
Coord C2 exon
chr2:74722553-74722631
Length
128 bp
Sequences
Splice sites
3' ss Seq
TAATTCCCACCATAAATTAGGTT
3' ss Score
3.37
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCATTCTGCTTTCCCAGAGCCTCACCCCCTCTTTTTCTAACCTTTGTCTCTGCAGAGGTGGGCTCTAGTCGCCGGCTGCGGGATCGCGTGGTCCGCAGCGGCCTGGGCTCCCGCCGCGACTCCACCGCAGCTCGCCCCCGGTCGCGATTGCGGCCGCTTCCAGAGCCGGCGGGGAGCCCGGAAGGAGCCCCGGGCGCCGAGCCACCAGCCGCCTCTCACACTCCAGCAGGGAGCCGACCGCCTGCTTCAACCCTGGTCCCGAGCTTCCTACCCGATCCCTCCAGCAACATGAGCCCAAACCTGCCGAGGATGGTGAGCGCAGCCGGGCAGCGCCGGATGGATTCCAGCCACAGTCCGGGCCGACCGCCCGCAGTTCGGCACCCTCCGG
Seq A exon
GTTAAGAGCATACAAGTGCAGATGCTTGGTTCCTGTAGCAGCGATAGGCAAGTGAGAGGCTCCAGCCAGCGCCCCGGGCTCAGGAGACAGCTCTCCTCTAAGCTTCTCTACCAACGAAAAGAAACCCA
Seq C2 exon
AAGACTAAAAACTTGAAGATGGACATGAGTGCCCTGGGAACCACTGTTCTCTTTGATCGGTCTGTAGGTTCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000101174_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCACACTCCAGCAGGGA
R:
GCAGGAGAACCTACAGACCGA
Band lengths:
253-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types