MmuEX1015678 @ mm10
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140574729-140578475:+
Coord C1 exon
chr1:140574729-140574857
Coord A exon
chr1:140575352-140575470
Coord C2 exon
chr1:140578455-140578475
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGCCTGATTTTCTAGAAA
3' ss Score
8.98
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGAAAATCACTGAAGATGACTTGTGGATCAGAACGTATGCCAGACTCTATCAGAAGTTGTGTTCTTCTACTGGAGATGTTCCCATCGGGATCTACAGAACAGAATCTCAGAAACTAACGACATCTGAG
Seq A exon
AAAAAATGGAGTAATTTTATTGGGAGCTAGATCCTATTGATACAGAAGGAAGAATTTTGATGACCACCTACAACTGAGAATACATCTGTGTTTTAACTTTATCACCTCTGTGGTTGCAG
Seq C2 exon
TCTCGAGAAATAGGATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-'47-48,'47-47,48-48
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000119786fB11814
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types